XLOC_025314 (cbx1a)


Basic Information

Item Value
gene id XLOC_025314
gene name cbx1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 24050043 ~ 24071582 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00049969
GTTCAGGAAACTGTTGTTACGGTTTAACCGGAAGATGGCGGAATAACACAGCTTTTCAGAGCACTGTTGACGTTGACAAGGAACCGGAAGGTTCCGCAGAGCCTCGATGAGCATGAGCCAACCTACAGAGACAGTTAGTGATGCTCCCAGCGTCACCGAAGAAGTTTCTCCAGACAGCAAGCTGGCGGCCACTGCTGGAAAGAAGCAGACCAAGAAGAAGGTGGAGGATGTTgtagaagaggaagaggaggaataTGTAGTGG
>TCONS_00049970
GCATGCACCATTGTAGTACGTACCCATGCACGTTCGGTCGAATTGGCGGGTTGCTGGAGCCTTTCGTGTAGCGTTACCTTTTGTCTGCTCAACCAAGGAGGCtcggtaaaataaaaacaaactctaCCCCCAGTCGACAGATTTTAAAGTTTGTCGAGATTTAAACCCGGTCTAGCTGCACTAAACCACCCATTTTGGCGTTTTTCGCCGTTAATTCAGTAATACACAGCACTGTTGACGTTGACAAGGAACCGGAAGGTTCCGCAGAGCCTCGATGAGCATGAGCCAACCTACAGAGACAGTTAGTGATGCTCCCAGCGTCACCGAAGAAGTTTCTCCAGACAGCAAGCTGGCGGCCACTGCTGGAAAGAAGCAGACCAAGAAGAAGGTGGAGGATGTTgtagaagaggaagaggaggaataTGTAGTGGAAAAGGTCCTGGACAGGCGGGTGGTGAAGGGCAGAGTGGAATACTTGCTCAAATGGAAGGGCTTTTCAGAagAAGATAACACATGGGAACCAGAGGACAACCTGGACTGTCCTGATCTCATCGCAGAGTacatgacaaaacataaaataaatgatgacaagAAAGAATCCAGTGCAAAGAGGAAAGAATCTGACACAGATGGTGGTGGAGAAGATAGTCGGCCTAAGAAGAGGAAAGATGAGCAAGACAAGCCAAGGGGATTTGCACGAGGTTTAGATCCAGAACGTATCATTGGAGCCACAGATTCCAGCGGGGAGCTCATGTTTCTAATGAAATGGAAAAACTCTGACGAGGCAGATCTGGTTCCAGCAAAAGAGGCCAATGTGAAGTGTCCACAGGTGGTAATTTCCTTCTATGAAGAGCGGCTAACATGGCACTCGTACCCTTCTGAGGAAGAAGAGAAGAAAGATGACAAGAACTAGGCTTGGGGCAAGTCAGAGCAGGTGTTAGGCTTATTTTGCTGTGTTTTCAGGGTGGGTTTGGGACAAGTTTCGAGttgggagaagaaaaaaaaaaaagacacccaAAATCACTCTAACTCTCAATACCATAAAACCTGGACTCAAATATAATTCAGAGCACGATATGCAGAAGTGAAGTCATCTTAAGCAGGCAAAAGTGAATGTTGTGTCAGAAGACTGGCCAACAGATGAATCGCAGGATCACTGTTTTCCCTCTTTGCTTCTCTTTCTGTTGGTTTATTATGGGAAGTAGGGTGTGTATATGCTGCAGTAGTTGCTCAGTTGTCATTCCCGGATGACAAAAATGAATTGAACGTCTGATTAGTTGTAAACTTGATGCAATGGGTCATCTGTGCATATCTTTTTCCTTCTGTATTTTTCTGATAAGAGATGAGAAGGACATTCAAGTCACTGTGTAATACGCTGCCCTAAGTTAAAACACAGTAAGTACGCGACACTGGAATTAAAAATTATGGATTCATAATTTGATTCAGTGTCCACATTCAATTTAAGTAGTGTTTGCTAAATTGAATGTGTGTAGTTGCTTTGTTTTGTCTATGTAGGGCAGTATGACGTAATTTCTCAAGCCTCTGCTTTTCTTTTCCATCTCATCTTTTGAGATTTTCTCTCGAAGTCATTTTTTTGTGTACAtacatttctaaaaacagttGTCACCTTATTAGTGAGCAAATTGCTGTGTTTTGCAGTTGCTGTTTTAGCAGTATTTTGGAATTTGTATTCAAGTATATAGTATTCTTGTCTTTTGTTCTCCACTTGAGGATATATATTGCATAAGGATATATTCACAGCCTAGTAAAACTGCATTTCCCATAATCTCATATAAATTCCTATTTTTAACTAATAACTGTCTTTGTATTTTATCAGTCGCATTACTGTGTGAAGAGAAAATCTGATCTTTATATCCCAGCTTTtctgactgatttttttttccaggttTTTTAGGCTGATCGAAATTGCTAGTCTTGACTCGTAAATACTTATGAAAAAATTGACAGACTTATTGTTTTAACCTCTTTGGTGGTGCTCATGAAGTCGAATGTACTACACAGCTTTAAGGCATCTTTTTATATCATGAACATTCAAAGGTGTAGTGAAAAGTCTTGCTAACATTACCGTGCTACAGATCAGGTCTCACAGTACCACCTTTGCACCAGCATAAGGTATTGACTATATAaagagtttttttaaatgttaattaatgtctGCAGTTGGTTAAAAAAGTGCTCAGATCACTGGATACTGTGTTTTTGCTAATTAAGGTATTAATAGTGACACTTTTGCTGCGTATCTGAGGAGCCGTGAAGTACTTTGTCCTGCACAATCAGTAATGTGACTGCATTATACTCCTTTCTGATGGACTCTGTTTTCTCTTTTAAAGTGTACTGTTTGAAGCATGTTACTTTCTTTCATTTTCACCTTTTCAAGGGGGAGACATTTATCTGTTCAttacaaaaataaactttttttaaattaaa
>TCONS_00049971
TCGATGAGCATGAGCCAACCTACAGAGACAGTTAGTGATGCTCCCAGCGTCACCGAAGAAGTTTCTCCAGACAGCAAGCTGGCGGCCACTGCTGGAAAGAAGCAGACCAAGAAGAAGGTGGAGGATGTTgtagaagaggaagaggaggaataTGTAGTGGAAAAGGTCCTGGACAGGCGGGTGGTGAAGGGCAGAGTGGAATACTTGCTCAAATGGAAGGGCTTTTCAGAagAAGATAACACATGGGAACCAGAGGACAACCTGGACTGTCCTGATCTCATCGCAGAGTacatgacaaaacataaaataaatgatgacaagAAAGAATCCAGTGCAAAGAGGAAAGAATCTGACACAGATGGTGGTGGAGAAGATAGTCGGCCTAAGAAGAGGAAAGATGAGCAAGACAAGCCAAGGGGATTTGCACGAGGTTTAGATCCAGAACGTATCATTGGAGCCACAGATTCCAGCGGGGAGCTCATGTTTCTAATGAAATGGAAAAACTCTGACGAGGCAGATCTGGTTCCAGCAAAAGAGGCCAATGTGAAGTGTCCACAGGTGGTAATTTCCTTCTATGAAGAGCGGCTAACATGGCACTCGTACCCTTCTGAGGAAGAAGAGAAGAAAGATGACAAGAACTAG

Function

symbol description
cbx1a Predicted to be located in nucleus. Is expressed in brain and retina. Orthologous to human CBX1 (chromobox 1).

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-4945 Predicted to be located in nucleus. Is expressed in brain and retina. Orthologous to human CBX1 (chromobox 1).

Ensembl:

ensembl_id ENSDARG00000004189

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00049969 False 263 mRNA 0.51 3 24050043 24065393
TCONS_00049970 False 2448 mRNA 0.40 6 24060454 24071582
TCONS_00049971 True 642 mRNA 0.47 5 24062748 24070047

Neighbor

gene id symbol gene type direction distance location
XLOC_025313 NA coding upstream 82077 23930446 ~ 23967966 (+)
XLOC_025307 hoxb3a coding upstream 278098 23697997 ~ 23771945 (+)
XLOC_025312 hoxb2a coding upstream 295212 23752150 ~ 23754831 (+)
XLOC_025310 hoxb4a coding upstream 326061 23710839 ~ 23723982 (+)
XLOC_025311 dre-mir-10c coding upstream 329298 23720651 ~ 23720745 (+)
XLOC_025315 copz2 coding downstream 22999 24094581 ~ 24111412 (+)
XLOC_025316 dre-mir-152 coding downstream 24375 24095957 ~ 24096036 (+)
XLOC_025317 NA coding downstream 49619 24121201 ~ 24133485 (+)
XLOC_025318 si:ch211-246i5.5 coding downstream 62836 24134418 ~ 24145250 (+)
XLOC_025319 CR790362.1 coding downstream 90287 24161869 ~ 24184426 (+)
XLOC_025429 BX649540.1 misc downstream 6177157 30248739 ~ 30249036 (+)
XLOC_025303 mir196b non-coding upstream 376588 23673377 ~ 23673455 (+)
XLOC_025301 NA non-coding upstream 381846 23665161 ~ 23668197 (+)
XLOC_025299 NA non-coding upstream 433242 23604478 ~ 23616801 (+)
XLOC_025323 NA non-coding downstream 145606 24217188 ~ 24217511 (+)
XLOC_025327 NA non-coding downstream 367015 24438597 ~ 24452013 (+)

Expression


Co-expression Network