XLOC_025317


Basic Information

Item Value
gene id XLOC_025317
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 24121201 ~ 24133485 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052666
CTTGTGCATCAACCTTGCAACCAGAAGAGGGCGATGGAGCATCAAGATGCAGAAAAGACTGAGGCTTTCTACTGGTTTGCCTTTCCTCATGTTCTGGTTCTTCATGACACCACAAGAATTTGGAATCTGAAGGGTGGAGAATAAGATGATTGGCTATTTTTGCAGTTCGTCATATAGGAGGCAGGGCTGTCGGAGATAGCCGTCCTTTTAGGGCCATAATTGAGGCGGGCAGGACGGCATGTGTGGGCGTGATAGGGTGATTGTGTCACAGAAAGCAAGATTGACAGGAGTGACAGCTCCATTTATTGGCTGCTAGAGTCTAGTCAGCAAAAGGGCATTCAGGGCCACCGACTGGCTCTGCTGGCGGCCTGAGCAGTCGGCGCCTGTAATGCATGAAGCCCTGGAGTCATGGTAAATAGCATCTCTTGTGCTTCAGGAATTTTATCCAACATGGAGGATGAAGAGATTTCTCCTGATCTTAAGGCAGTGCTGTTGTCCTTTTAAATTAAGCTTCTCCATATGCATGAGCAAAGCGGGGGGAGAAAACGTTGGCAATGAAGGAAAGAAGTGCCATGGCGGGGAGTCTAATCAAGTGACAAACTGCTGAGCTGACTCAAAACACGAGCTGTTCATCGGAGATAGATCAGGAGCGTCACGGTGGGTTCGGCTGGATGAGTGAGTCATTTTCTTCAAGTACGTTGGAATGAACACTTCTCAAATGGGTTAAAGTGAAATGACTGGGGCCACCAGGATCAATATAGTGTAGATTTCATGCCTGTCTAATCACGGACACAAGAGAAGGTGCCAGTTTTCTTTCTCTAGTATAGCCCTCTCTTTTACAACCTCAGGTGCTTCTGGATACACTTAGTGCTCACTGTATGTCACCTGGGACTACCCGAGATCAACCCTTAGCTGACCTCTCTCTGGTATCTGTGCGCACACTGCCAAAAAAGACAGAATGAGAGAGTAAGAAATAGAAAGTGCCCTAAAAAGTCTTAACATGaaagaaatctttaaaa

Function

GO:

id name namespace
GO:0016441 posttranscriptional gene silencing biological_process
GO:0031047 gene silencing by RNA biological_process
GO:0035194 post-transcriptional gene silencing by RNA biological_process

KEGG:

id description
ko03050 Proteasome
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052666 True 1019 lncRNA 0.47 6 24121201 24133485

Neighbor

gene id symbol gene type direction distance location
XLOC_025315 copz2 coding upstream 9789 24094581 ~ 24111412 (+)
XLOC_025316 dre-mir-152 coding upstream 25165 24095957 ~ 24096036 (+)
XLOC_025314 cbx1a coding upstream 49619 24050043 ~ 24071582 (+)
XLOC_025313 NA coding upstream 153235 23930446 ~ 23967966 (+)
XLOC_025312 hoxb2a coding upstream 366370 23752150 ~ 23754831 (+)
XLOC_025318 si:ch211-246i5.5 coding downstream 933 24134418 ~ 24145250 (+)
XLOC_025319 CR790362.1 coding downstream 28384 24161869 ~ 24184426 (+)
XLOC_025320 prr15la coding downstream 56319 24189804 ~ 24197270 (+)
XLOC_025321 atf4b coding downstream 64449 24197934 ~ 24200819 (+)
XLOC_025322 adsl coding downstream 73758 24207243 ~ 24218622 (+)
XLOC_025429 BX649540.1 misc downstream 6115254 30248739 ~ 30249036 (+)
XLOC_025311 dre-mir-10c non-coding upstream 400456 23720651 ~ 23720745 (+)
XLOC_025303 mir196b non-coding upstream 447746 23673377 ~ 23673455 (+)
XLOC_025301 NA non-coding upstream 453004 23665161 ~ 23668197 (+)
XLOC_025323 NA non-coding downstream 83703 24217188 ~ 24217511 (+)
XLOC_025327 NA non-coding downstream 305112 24438597 ~ 24452013 (+)
XLOC_025342 NA non-coding downstream 797095 24930580 ~ 24936255 (+)
XLOC_025344 CR936416.1 non-coding downstream 922491 25055976 ~ 25060120 (+)

Expression


Co-expression Network