XLOC_025318 (si:ch211-246i5.5)


Basic Information

Item Value
gene id XLOC_025318
gene name si:ch211-246i5.5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 24134418 ~ 24145250 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00049976
GCCACGAGCGTGAAAGTCATCAGGCTGTCACGGATCTGCGCGTGGCCATGACCGGCATGATAAAGAACCGGACGCTATTTCGGCGAGGAAAACGGCTAATGGGCGAAAGATGAGGAGAAAAACAATAGCGAAGCGCATACTGTACAATGGATACGAGAGATACGAAGAGACAGCCGAGGAAACGGGCGCTAGGGCGAACCACGTCTTCAGTCAAGAACCGGCGAAGAGGAGAAAATGGAGAGGACTAAATGGAGAGGACATCTCACCTTGCAATGTTGACTACATCAAGTTCAAAACAAAGGCTTTTGAGGTGGATAAAGCCCTTGGAGATGCAGCTAGGGATACAGACTTTACTATGGAGGTACTCGGAAGCCTCCAATCACGTTCAAGGGCGGAGCTAATTGCCATGGTGTTGAGTATGCAGAGAGAGATGGACGGCCTCCGAGAGCAGATCAGGAGCCTCACAGCTTGTGGGAAGTTGGCTCAGACACTTGAAGAGTTGATCGAGAGGAGTGATAGATGGCTGTGCTGCTGCCACAAAGCTGCAACTCCCAGCATTCCTAGGGAGCAGGAGAGAAGCAGGCCACCCAGTCACATCTCTCCTCCAGCAGAGCTCAGTGGAACAACAGCTGAATGTGCAAGTTCAGAGCAGCAGGGGTGTGGTCAGTATGAGGTCACACAAACAATGCCGCAGAGGAATGGAGCGCCTCTGGAACAAAAAGTTATCACTGCTGATCTCCTAGAGCGCTGCAACACAGGGACCACCGCTCAAAAACTAACCAATGACCTGCTGCGCAGCCTTTATGACAGAGACTGTCTGGCTTCTCACTCAATCTCAGGCATCGTTAACAGCAAACGAGGGATGCCGAAGCCAGCTCTTCCTGCCCATGAGATCCAGGCCATTTTAAGTACGTATAAGGGTTGCTTTGTAACAAATACTGAACGATGGGCGTACTTTAGTTAGTATGAGAATACGTCCAGTTCCATTTCATTAACTGCAATCAGGACAGGAAGTTTTGATTAATTGTGATCTCAAGTTTGCTGTTTTGATTACCAGTGAAATGTTCTCCACAGGGACAGTGCAGCAGTTCTTTCCCGGAAAGACAGATTCGGAAATAAAGGGCTACATTCGACAGAAGCTTCAGAATGAGGCCAAGAGGCTTCGGAAAAGGCCACACCCAGCTGATGAATTATTGGTGGGATCTCCGGAGGAGGCGGGAGCAATGTATGAGCATTGAAAGTTGGCATCTTCAATGAACTTGAAGAATTCACAATTTAGCATCACAAAATTCTATTAgcaactttaaagggatagttttgtCACAtttgttctgtcatcattttctcagttTTTAGACTTGCTTGTGTGTAGGTTTGAAATGATATGaaggtgagtaaatcatgacagaactattactttaaataagagtGCACAGTTAACCGAAATAACCCAGAAAATGCAAAGAGCAGTACAGACAAAATAGAGTAACGAGCTTTACTGTGGTTATTTACATGTGAGAAGTGTAAATCCAGTGTTTGTCAGTGTCTTACAGCAACATGGCTCGCAGAAAATTATAAGCTATGATGTTACTTATTTTATGTGCATATCACCAAATATTTTGACAAAACAATAAGTGCTTAAAAAGGAAGCCTCAAGATCTTTTAGCATTGAATTAATATGgtatttaaatgtcttttaattaattcattcattcatcacaaattcataattttacatttgcAATCTTATATTTTGTACAATTAAATACTACAATAGAaactattttcttattttaaggtttttattaattagtagtaataataaaccTATGATTAATTCAAATTATTTCACATATAGGGTGACgtgatggcacagtgggtagctctgtcgcctcacagcaagaagctcactggttcaagcctcggctggatcagttggcatttttttttggagttttgcatgttctacccatgtttgggtgggtttcttctgggtgctccggttttcctcaaaagtccaaagacgtgcaataagtgaattgggtaagctaaattgtccgtagagtatgtgtgtgaatgagagtgtatacagtaagtgtttcccagagatgggttgcagctggaaaggtatcctatgcataaaacatgttggaaaagatggtggttcatttcgctgtggcgacccctgatgaataaagggactaagacgaaaataaaataaatgaatttgatttatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatattattgtttatatatgaCACACAGTACAATCATACAGCCTTACAATCAAGCGCAACAAACCtggagctttatttatttttatatcatattttaaatccCAATCACACTTTTCATCAGCACAATCGCTAATATATTTCTCCCAAAAATTGTGCACtcctattttttttaagtgaactatccctttaagatcgtATCTGAATGGTTTTGTCAACGCTATAGAGTACATGACAAACgtcatatatgtatgtatgtatgatgtTAATCATTTGGATTACACAAAACTGACTTTTTTATTGATATGAAATTGCGAAGCGAAACCTGGAGTCACAGTTCGAAGTAGATGAAAAACAGTAGCTTCGGCGTATCACTGCCAGACGTTATCACACACTGTTTGTCGTGCGCTAAAACTTGGAGTGAAGTAGACTAAAGCTGCGAACCCAGCGGCAGATGGTTAAGCATCGCTCTCCTGTAAAATTACATGGATGTCACTTGGTAGGGGGGTTACATCGTGATTGATGTAGTTCAGACTTGTGGTATTTTAGTTGATCACATGTTGAAAGTGTGCCCGCCGTGTAACGTGAAtatattttctgtgtgtgtgtgatgtgacaCACACGTGCCTCTTCTATTGGACTCCTTACTGTGGCCTTATCAGTCAGAAAACGCTGTAGTACAGTTCGAAACCACTGTGATTACATCCATTAAAAGAAACGACTTGTCTGTC
>TCONS_00052667
CACGGATCTGCGCGTGGCCATGACCGGCATGATAAAGAACCGGACGCTATTTCGGCGAGGAAAACGGCTAATGGGCGAAAGATGAGGAGAAAAACAATAGCGAAGCGCATACTGTACAATGGATACGAGAGATACGAAGAGACAGCCGAGGAAACGGGCGCTAGGGCGAACCACGTCTTCAGTCAAGAACCGGCGAAGAGGAGAAAATGGAGAGGACTAAATGGAGAGGACATCTCACCTTGCAATGTTGACTACATCAAGTTCAAAACAAAGGCTTTTGAGGTGGATAAAGCCCTTGGAGATGCAGCTAGGGATACAGACTTTACTATGGAGGTACTCGGAAGCCTCCAATCACGTTCAAGGGCGGAGCTAATTGCCATGGTGTTGAGTATGCAGAGAGAGATGGACGGCCTCCGAGAGCAGATCAGGAGCCTCACAGCTTGTGGGAAGTTGGCTCAGACACTTGAAGAGTTGATCGAGAGGAGTGATAGATGGCTGTGCTGCTGCCACAAAGCTGCAACTCCCAGCATTCCTAGGGAGCAGGAGAGAAGCAGGCCACCCAGTCACATCTCTCCTCCAGCAGAGCTCAGTGGAACAACAGCTGAATGTGCAAGTTCAGAGCAGCAGGGGTGTGGTCAGTATGAGGTCACACAAACAATGCCGCAGAGGAATGGAGCGCCTCTGGAACAAAAAGTTATCACTGCTGATCTCCTAGAGCGCTGCAACACAGGGACCACCGCTCAAAAACTAACCAATGACCTGCTGCGCAGCCTTTATGACAGAGACTGTCTGGCTTCTCACTCAATCTCAGGCATCGTTAACAGCAAACGAGGGATGCCGAAGCCAGCTCTTCCTGCCCATGAGATCCAGGCCATTTTAAGGACAGTGCAGCAGTTCTTTCCCGGAAAGACAGATTCGGAAATAAAGGGCTACATTCGACAGAAGCTTCAGAATGAGGCCAAGAGGCTTCGGAAAAGGCCACACCCAGCTGATGAATTATTGGTGGGATCTCCGGAGGAGGCGGGAGCAATGTATGAGCATTGAAAGTTGGCATCTTCAATGAACTTGAAGAATTCACAATTTAGCATCACAAAATTCTATTAgcaactttaaagggatagttttgtCACAtttgttctgtcatcattttctcagttTTTAGACTTGCTTGTGTGTAGGTTTGAAATGATATGaaggtgagtaaatcatgacagaactattactttaaataagagtGCACAGTTAACCGAAATAACCCAGAAAATGCAAAGAGCAGTACAGACAAAATAGAGTAACGAGCTTTACTGTGGTTATTTACATGTGAGAAGTGTAAATCCAGTGTTTGTCAGTGTCTTACAGCAACATGGCTCGCAGAAAATTATAAGCTATGATGTTACTTATTTTATGTGCATATCACCAAATATTTTGACAAAACAATAAGTGCTTAAAAAGGAAGCCTCAAGATCTTTTAGCATTGAATTAATATGgtatttaaatgtcttttaattaattcattcattcatcacaaattcataattttacatttgcAATCTTATATTTTGTACAATTAAATACTACAATAGAaactattttcttattttaaggtttttattaattagtagtaataataaaccTATGATTAATTCAAATTATTTCACATATAGGGTGACgtgatggcacagtgggtagctctgtcgcctcacagcaagaagctcactggttcaagcctcggctggatcagttggcatttttttttggagttttgcatgttctacccatgtttgggtgggtttcttctgggtgctccggttttcctcaaaagtccaaagacgtgcaataagtgaattgggtaagctaaattgtccgtagagtatgtgtgtgaatgagagtgtatacagtaagtgtttcccagagatgggttgcagctggaaaggtatcctatgcataaaacatgttggaaaagatggtggttcatttcgctgtggcgacccctgatgaataaagggactaagacgaaaataaaataaatgaatttgatttatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatattattgtttatatatgaCACACAGTACAATCATACAGCCTTACAATCAAGCGCAACAAACCtggagctttatttatttttatatcatattttaaatccCAATCACACTTTTCATCAGCACAATCGCTAATATATTTCTCCCAAAAATTGTGCACtcctattttttttaagtgaactatccctttaagatcgtATCTGAATGGTTTTGTCAACGCTATAGAGTACATGACAAACgtcatatatgtatgtatgtatgatgtTAATCATTTGGATTACACAAAACTGACTTTTTTATTGATATGAAATTGCGAAGCGAAACCTGGAGTCACAGTTCGAAGTAGATGAAAAACAGTAGCTTCGGCGTATCACTGCCAGACGTTATCACACACTGTTTGTCGTGCGCTAAAACTTGGAGTGAAGTAGACTAAAGCTGCGAACCCAGCGGCAGATGGTTAAGCATCGCTCTCCTGTAAAATTACATGGATGTCACTTGGTAGGGGGGTTACATCGTGATTGATGTAGTTCAGACTTGTGGTATTTTAGTTGATCACATGTTGAAAGTGTGCCCGCCGTGTAACGTGAAtatattttctgtgtgtgtgtgatgtgacaCACACGTGCCTCTTCTATTGGACTCCTTACTGTGGCCTTATCAGTCAGAAAACGCTGTAGTACAGTTCGAAACCACTGTGATTACATCCATTAAAAGAAACGACTTGTCTGTC
>TCONS_00049977
CTGTACAATGGATACGAGAGATACGAAGAGACAGCCGAGGAAACGGGCGCTAGGGCGAACCACGTCTTCAGTCAAGAACCGGCGAAGAGGAGAAAATGGAGAGGACTAAATGGAGAGGACATCTCACCTTGCAATGTTGACTACATCAAGTTCAAAACAAAGGCTTTTGAGGTGGATAAAGCCCTTGGAGATGCAGCTAGGGATACAGACTTTACTATGGAGGTACTCGGAAGCCTCCAATCACGTTCAAGGGCGGAGCTAATTGCCATGGTGTTGAGTATGCAGAGAGAGATGGACGGCCTCCGAGAGCAGATCAGGAGCCTCACAGcgtgTTTCTATTGCCAGAGAATCCCGAAAGCTTTCCTTCAACTGACTCATTCACAGATGATTTCACATTTCGAGATCATTACATTTTGAGGAAAAGATCAGCAAGTTCACGGGGAAACTTCACGTCAAAGGAAGATTTAGTGTTACTGTGCTGTGCCATGTTACACAACAGTTTAACACTGGTGAGACAATTTCAGAATgcattcatatgt

Function

symbol description
si:ch211-246i5.5 Predicted to enable transcription corepressor activity. Predicted to be involved in negative regulation of Notch signaling pathway and positive regulation of neuron differentiation. Predicted to be active in nucleus.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000097637

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00049976 False 3081 mRNA 0.40 6 24134418 24145250
TCONS_00052667 False 2887 lncRNA 0.40 7 24134446 24145250
TCONS_00049977 True 539 processed_transcript 0.46 5 24134557 24137908

Neighbor

gene id symbol gene type direction distance location
XLOC_025317 NA coding upstream 933 24121201 ~ 24133485 (+)
XLOC_025315 copz2 coding upstream 23006 24094581 ~ 24111412 (+)
XLOC_025316 dre-mir-152 coding upstream 38382 24095957 ~ 24096036 (+)
XLOC_025314 cbx1a coding upstream 62836 24050043 ~ 24071582 (+)
XLOC_025313 NA coding upstream 166452 23930446 ~ 23967966 (+)
XLOC_025319 CR790362.1 coding downstream 16619 24161869 ~ 24184426 (+)
XLOC_025320 prr15la coding downstream 44554 24189804 ~ 24197270 (+)
XLOC_025321 atf4b coding downstream 52684 24197934 ~ 24200819 (+)
XLOC_025322 adsl coding downstream 61993 24207243 ~ 24218622 (+)
XLOC_025323 NA coding downstream 71938 24217188 ~ 24217511 (+)
XLOC_025429 BX649540.1 misc downstream 6103489 30248739 ~ 30249036 (+)
XLOC_025311 dre-mir-10c non-coding upstream 413673 23720651 ~ 23720745 (+)
XLOC_025303 mir196b non-coding upstream 460963 23673377 ~ 23673455 (+)
XLOC_025327 NA non-coding downstream 293347 24438597 ~ 24452013 (+)
XLOC_025342 NA non-coding downstream 785330 24930580 ~ 24936255 (+)
XLOC_025344 CR936416.1 non-coding downstream 910726 25055976 ~ 25060120 (+)

Expression


Co-expression Network