XLOC_025319 (CR790362.1)


Basic Information

Item Value
gene id XLOC_025319
gene name CR790362.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 24161869 ~ 24184426 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00049978
agacagctttgcacagtttgtCTTTAGATAAAATGAAATGACTTGCTGCGGACGCTGTCAGACTCAGAAGAACATCTGTCCTGCCTGGAGATCCTGATTTCTGACCCCTGCCTGGAGGAGAGCGGCGCTGTGTGCTGTAGAGGGGAGATAATGGCCTCTGGCTCCTCAATCTCTCGCTGTAATGTGTTTCTGACGCCAGCGAGTGCCTGCGGCCCCTTGGGAGGCACAGGGACGACATCATGATGGAGTGTCAGCAGAATGAAACGAGAGAAGCCACCCAGAAAGCGATGACCCGCTGACCCCTGTGGTAATGCCAGCCTCCAGGCGAGCTGACTTCACACCAGCAGATGCACACAGCTCTTTCTGTCCTGCTCTTCAGCTGTCCAGGATCTGGAGCCATGGAGAGAGAAGAGCTCAAGGACGGGGACAGCAGAGCCGCCGCTGCAGCCCTGCGGGCCTGTTCTGGACTCCACTGTCAGCCATGATGGACAGCTGCTGCCCAGGTATATCAGGACAAGTGCTTTATAGGATAATGTAGGCGGCTGGTGTCCTGGTTTCTGATTATACATGCACAACAAACCCTCTGCTGTATGCAATTAAGTACAAGACCAACAAGATTATACAAATATATTCAT
>TCONS_00052668
TCCATTTTGAATGTCTCGTCGAGCACGTTGGATCATACCTGAGAGATCTCAATATGAGGGAGGAGAGCGGCGCTGTGTGCTGTAGAGGGGAGATAATGGCCTCTGGCTCCTCAATCTCTCGCTGTAATGTGTTTCTGACGCCAGCGAGTGCCTGCGGCCCCTTGGGAGGCACAGGGACGACATCATGATGGAGTGTCAGCAGAATGAAACGAGAGAAGCCACCCAGAAAGCGATGACCCGCTGACCCCTGTGGTAATGCCAGCCTCCAGGCGAGCTGACTTCACACCAGCAGATGCACACAGCTCTTTCTGTCCTGCTCTTCAGCTGTCCAGGATCTGGAGCCATGGAGAGAGAAGAGCTCAAGGACGGGGACAGCAGAGCCGCCGCTGCAGCCCTGCGGGCCTGTTCTGGACTCCACTGTCAGCCATGATGGACAGCTGCTGCCCAGGCAGTAATGATGACTGACGGGCCCTACTGCCACCTGGCGGACAAATACAAGACTGCAGAGATTGAACTGCAAGAGATGGAGCTGTAATTTGAGAAACTGGCCACCAGCTGGCGCGCACACACAACATAGGCAACGCTTTATCTGGCAC
>TCONS_00052337
GGAGGAGAGCGGCGCTGTGTGCTGTAGAGGGGAGATAATGGCCTCTGGCTCCTCAATCTCTCGCTGTAATGTGTTTCTGACGCCAGCGAGTGCCTGCGGCCCCTTGGGAGGCACAGGGACGACATCATGATGGAGTGTCAGCAGAATGAAACGAGAGAAGCCACCCAGAAAGCGATGACCCGCTGACCCCTGTGGTAATGCCAGCCTCCAGGCGAGCTGACTTCACACCAGCAGATGCACACAGCTCTTTCTGTCCTGCTCTTCAGCTGTCCAGGATCTGGAGCCATGGAGAGAGAAGAGCTCAAGGACGGGGACAGCAGAGCCGCCGCTGCAGCCCTGCGGGCCTGTTCTGGACTCCACTGT
>TCONS_00049979
GTCGAGATATTTCGCCCAATAGTGAAAAATGGTTGTTAATTTGTTTGCTGAAGACCAACCAAGAGGAGGCAGCGGTGGATAAAAAAAGTGATGAGAGCAGAGATGTTTTGATTGATGTGCTCCATCATTCAACGTCCGTTCTTCTCCACAGCGTCAAGaaccagtgtttgtgtgtttgtgcacatcaAGTAAAGATAAGGCAGTAATGATGACTGACGGGCCCTACTGCCACCTGGCGGACAAATACAAGACTGCAGAGATTGAACTGCAAGAGATGGAGCTGTAATTTGAGAAACTGGCCACCAGCTGGCGCGCACACACAACATAGGCAACGCTTTATCTGGCACAAGACAGTGGACAGGCAGGTCTTGGCTGCAATGAGTAAACTACCAACGCCAGAGCCCAGCTGGTGCTGAACAGACCCTCAGCCACACGCCTTTCGAGTGGGCCATGAAATGTGGCTTGTTCTTATTTAATCCCATGTGTCTGAAGTTACTGAACATAAACTGTCCTACTGCCAGTGCACCCCATGAACCAGGCAGACCTCAGTCCGAG

Function

GO:

id name namespace
GO:0045446 endothelial cell differentiation biological_process
GO:0003157 endocardium development biological_process
GO:0003158 endothelium development biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0050793 regulation of developmental process biological_process

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000096864 ENSDARG00000097087

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00049978 False 635 lncRNA 0.53 3 24161869 24171230
TCONS_00052668 False 596 lncRNA 0.56 4 24162982 24182360
TCONS_00052337 False 363 lncRNA 0.60 2 24164919 24171071
TCONS_00049979 True 555 lncRNA 0.48 4 24180633 24184426

Neighbor

gene id symbol gene type direction distance location
XLOC_025318 si:ch211-246i5.5 coding upstream 16619 24134418 ~ 24145250 (+)
XLOC_025317 NA coding upstream 28384 24121201 ~ 24133485 (+)
XLOC_025315 copz2 coding upstream 50457 24094581 ~ 24111412 (+)
XLOC_025316 dre-mir-152 coding upstream 65833 24095957 ~ 24096036 (+)
XLOC_025314 cbx1a coding upstream 90287 24050043 ~ 24071582 (+)
XLOC_025320 prr15la coding downstream 5378 24189804 ~ 24197270 (+)
XLOC_025321 atf4b coding downstream 13508 24197934 ~ 24200819 (+)
XLOC_025322 adsl coding downstream 22817 24207243 ~ 24218622 (+)
XLOC_025323 NA coding downstream 32762 24217188 ~ 24217511 (+)
XLOC_025324 zgc:123244 coding downstream 35928 24220354 ~ 24226028 (+)
XLOC_025429 BX649540.1 misc downstream 6064313 30248739 ~ 30249036 (+)
XLOC_025313 NA non-coding upstream 193903 23930446 ~ 23967966 (+)
XLOC_025311 dre-mir-10c non-coding upstream 441124 23720651 ~ 23720745 (+)
XLOC_025303 mir196b non-coding upstream 488414 23673377 ~ 23673455 (+)
XLOC_025327 NA non-coding downstream 254171 24438597 ~ 24452013 (+)
XLOC_025342 NA non-coding downstream 746154 24930580 ~ 24936255 (+)
XLOC_025344 CR936416.1 non-coding downstream 871550 25055976 ~ 25060120 (+)
XLOC_025351 NA non-coding downstream 1124284 25308710 ~ 25308964 (+)

Expression


Co-expression Network