XLOC_025320 (prr15la)


Basic Information

Item Value
gene id XLOC_025320
gene name prr15la
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 24189804 ~ 24197270 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00049980
aattattttgtttacgAGGACCAATTTCTAAAATATTGGAtgaacatctgaaaaaaaaaatcctccatCTTGGATGACCCGATGCTATTGTCCTAAAGCTGTTTATTCAGGCAGCAGAGGGAGGAGTGTGTGTGGCTGCATGAAGGGAGGAGTCGCGCACCTGTGAATCTACACCTGCTTGCCAGAGAGAAGGACAGGACAGCCAAACCGGGGAAGAGGCAGGAGACCAGAGATACACCGAAACTAATTCAGATCCAAAGAATAAAGAGGGTCCTACAGGCCGATGACCTCACCTGCTGGCATCAACCAGATTGAGAACTGAACTGAAGGATAGTGAACCCTCAAAGGCAGATAACAAACAACTGTCACAACGGACGTACCTTTACCTGTACAGAAACTGCCATTAACACAATGGCGACCGCAGAACCTGCCCCAGCCTGGTGGAAACTGACCTTCCTGCGAAAAAAGAAATCGGAGCCAAAAGTGCTGTATGAAATCGCAGGAGACCACAGCAGCAATGGCGGAGAGGCATCTGGGACCACTGATGCTGCAACAGACAGCCAGTTTAATGCCCGCTTGGAGCGCATTGTGGACAAAACAGCAACAAAGGGGCGACATGTGAAAGTCTCGCATTCAGGTCGCTTTAAAGAGAAGAAACGAATCCGCTCTACTCTAGCAGAAAACCCTGAGCTTTTCCCTGAGGCCGAAACGACAGCTAATGAGAACAATAAAAGTGGAAAATAGAGTCGCTGTGTAAACACACTAGCATGTGTGTGTAAAGCAGCTCAAGAGGGCCAGCACTCTTCCAATTGACGTCCTCTGCCGTTTACAATCGCCTGAAGCTCTGAGCCTGAAGCAAGAGCAGGATCGCTGAATTAATGACTGATCTATACTGATGTTTGGTAACAAAGACATGCACAAACCCAAAGATCAGGTTTCTTCACAGATACACACAGCACCACTGCATTGTGGTCGACCCTTGAAAGGCTGACATTTAGCAAATGTTTAGCAAAGAGAAGGAATCAAACCAATCATATAGCAGCACAAGATGTCAGTAATGATAGTGGTTATTCTTTgattatttcttatatattatatGGTGAATCAGTTGCAGCTAGAGCACTTGTGATTcaacatattaaaaaattattacaagCATTGTGCTACAATGTTAAAAGGTTTTTTAGTAATGTCTATTCCAAATTTatactgtaattatattaaacatAGATTGCTGGTATctttgaaaaactaaataaaaacaaagtgtcATCATTGCTTGAATAGACCAAAATATATATTCTGAATAATAACTCTCTTGCTATAATACACAATTTTAGCCTCTTGTGTTGCTGTGTCGggtttcatttagatttttaatcttGGTTGCTATTTATTGTACAGagattttataaaatgtaatctgAAAATGGAGGGGGTTTATAAttgctttttgtttaataaaatggtCAAACATTTGCACAATGTCTAATTTAATAGTTTGCTTAGCTGTGATTAAACACTTAGTTTTGTACAAATGTATGCATTGTTTCAAATATACCTCTGTAGAAAATAAATTATTGCTTTCAAGATGTGGA
>TCONS_00049981
GCCAAACCGGGGAAGAGGCAGGAGACCAGAGATACACCGAAACTAATTCAGATCCAAAGAATAAAGAGGGTCCTACAGGCCGATGACCTCACCTGCTGGCATCAACCAGATTGAGAACTGAACTGAAGGATAGTGAACCCTCAAAGGCAGATAACAAACAACTGTCACAACGGACGTACCTTTACCTGTACAGAAACTGCCATTAACACAATGGCGACCGCAGAACCTGCCCCAGCCTGGTGGAAACTGACCTTCCTGCGAAAAAAGAAATCGGAGCCAAAAGTGCTGTATGAAATCGCAGGAGACCACAGCAGCAATGGCGGAGAGGCATCTGGGACCACTGATGCTGCAACAGACAGCCAGTTTAATGCCCGCTTGGAGCGCATTGTGGACAAAACAGCAACAAAGGGGCGACATGTGAAAGTCTCGCATTCAGGTCGCTTTAAAGAGAAGAAACGAATCCGCTCTACTCTAGCAGAAAACCCTGAGCTTTTCCCTGAGGCCGAAACGACAGCTAATGAGAACAATAAAAGTGGAAAATAGAGTCGCTGTGTAAACACACTAGCATGTGTGTGTAAAGCAGCTCAAGAGGGCCAGCACTCTTCCAATTGACGTCCTCTGCCGTTTACAATCGCCTGAAGCTCTGAGCCTGAAGCAAGAGCAGGATCGCTGAATTAATGACTGATCTATACTGATGTTTGGTAACAAAGACATGCACAAACCCAAAGATCAGGTTTCTTCACAGATACACACAGCACCACTGCATTGTGGTCGACCCTTGAAAGGCTGACATTTAGCAAATGTTTAGCAAAGAGAAGGAATCAAACCAATCATATAGCAGCACAAGATGTCAGTAATGATAGTGGTTATTCTTTgattatttcttatatattatatGGTGAATCAGTTGCAGCTAGAGCACTTGTGATTcaacatattaaaaaattattacaagCATTGTGCTACAATGTTAAAAGGTTTTTTAGTAATGTCTATTCCAAATTTatactgtaattatattaaacatAGATTGCTGGTATctttgaaaaactaaataaaaacaaagtgtcATCATTGCTTGAATAGACCAAAATATATATTCTGAATAATAACTCTCTTGCTATAATACACAATTTTAGCCTCTTGTGTTGCTGTGTCGggtttcatttagatttttaatcttGGTTGCTATTTATTGTACAGagattttataaaatgtaatctgAAAATGGAGGGGGTTTATAAttgctttttgtttaataaaatggtCAAACATTTGCACAATGTCTAATTTAATAGTTTGCTTAGCTGTGATTAAACACTTAGTTTTGTACAAATGTATGCATTGTTTCAAATATACCTCTGTAGAAAATAAATTATTGCTTTCAAGATGTG

Function

symbol description
prr15la Is expressed in lateral line system; otic placode; otic vesicle; and pronephric duct. Orthologous to human PRR15L (proline rich 15 like).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040801-218 Is expressed in lateral line system; otic placode; otic vesicle; and pronephric duct. Orthologous to human PRR15L (proline rich 15 like).

Ensembl:

ensembl_id ENSDARG00000025615

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00049980 False 1598 mRNA 0.40 3 24189804 24197270
TCONS_00049981 True 1395 mRNA 0.39 2 24190207 24197268

Neighbor

gene id symbol gene type direction distance location
XLOC_025319 CR790362.1 coding upstream 5378 24161869 ~ 24184426 (+)
XLOC_025318 si:ch211-246i5.5 coding upstream 44554 24134418 ~ 24145250 (+)
XLOC_025317 NA coding upstream 56319 24121201 ~ 24133485 (+)
XLOC_025315 copz2 coding upstream 78392 24094581 ~ 24111412 (+)
XLOC_025316 dre-mir-152 coding upstream 93768 24095957 ~ 24096036 (+)
XLOC_025321 atf4b coding downstream 664 24197934 ~ 24200819 (+)
XLOC_025322 adsl coding downstream 9973 24207243 ~ 24218622 (+)
XLOC_025323 NA coding downstream 19918 24217188 ~ 24217511 (+)
XLOC_025324 zgc:123244 coding downstream 23084 24220354 ~ 24226028 (+)
XLOC_025325 pdgfbb coding downstream 78327 24275597 ~ 24297419 (+)
XLOC_025429 BX649540.1 misc downstream 6051469 30248739 ~ 30249036 (+)
XLOC_025313 NA non-coding upstream 221838 23930446 ~ 23967966 (+)
XLOC_025311 dre-mir-10c non-coding upstream 469059 23720651 ~ 23720745 (+)
XLOC_025327 NA non-coding downstream 241327 24438597 ~ 24452013 (+)
XLOC_025342 NA non-coding downstream 733310 24930580 ~ 24936255 (+)
XLOC_025344 CR936416.1 non-coding downstream 858706 25055976 ~ 25060120 (+)
XLOC_025351 NA non-coding downstream 1111440 25308710 ~ 25308964 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G29328 NA non-coding NC_048565.1 CM023219.2 28846254 ~ 28846459 (+)