XLOC_025327


Basic Information

Item Value
gene id XLOC_025327
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 24438597 ~ 24452013 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00049992
CTGCAGTACTTGTTTAATTATTCCACGCCACAAAATTCACACCATTTAAGCGTGGATTTAGTTGTCCAGATACTTTATGGCGCCCATTGCATATCAAGGAGTGTTATTAATAGAGTTTGCTGCCTCCAATTCTTCAACAGCCTGCAGATAAAGGAGTCGGAGTGACCGGTCTGGAGCTGCTGGATCTGGTTGAtggaggtggtggtggtggaggtGCAGGCGCAGGCGCAGGTGGAGCTGCTTGCTGGCTGCTGCTGAAGGGCTGGTCCAGGAGATTGTTCATACTGTTGCTTCTTCTAAAAGAGCTGCTGCTGAACAGAGAGCAAGGTCAGAGGTCATGAGACTGCAGCTCAGATGCGCAGCTGCTAGGAAATGTGCAGTGTCCGCTTACCTGGGAACAGGTGGTCCAGGTGGTCCATCTGTGAGGCCCACGTAAGCAGCAGGGAACCAGCCTTGCCTGAACAATGGAGATCAAATGATCAGGAGACTAAATCAGGACCTCCGAGTGGAACCAGCGAAACTGAATCAAATCACACAGACTCATTAAACATGGGGTTGACTGTACACCCAATCAAACGTGCATTGTCAACAACACGCTAACAGAAGATATCAAACGATGGATCGATAGTCAAGGATGAATAACAGACCACTCCCTCCAGCTCGTTGGTGAGTCTCCTCTGACTGTCTGACATCTGTATCAACACATCACCTGCGAAGCAAACGCACGAGTAAAAGAGAAGTTTTCATTTATGATCTTATAACATCCATAGTATCTGTCTGTGTGTTAAAGTAAAGGTATTAGTCTCTAAAGGTTGCACTGCCAAGCTGACGTTgtgtcatcatttattatttaacatcacAGAGGAGGTTATCTGATATTGACTACACACACAGTCATGCCACCTCTCTGCAGTCATAAAATATGATTCATAGCAACAAAAGCACCATTGAAATTTAATGAAATTTTTCCATTAAACCACAACAGGGTGAGAGATGCCAgccataaataaacacacacacacacacacacacacgctcactctctctctctttctctcttgtgtgtgtgtgagattcaGTGAGGAACTGAGTGCATTTACAAGAGCAAAGTACAATATAGTGTGTGAAGGACACAGACTCCTTCCCAATTTATCACCCTCAATAAACACACACGCAAAACTCTCTCTCGCTCTCACTTTCTGCTCTGTATGGAAAGTACATATTCATCAGAAAACAAGAAAATGAACAGTATATCGAAAATCTGACTTCGACAGAAACGTATCCTGCTGTAATATTAAAGCTAAGGAGTGTGAACGAACTTGAAATGGGTGGGAATTAAAAGCTTTACCCAGTAAACGTGAGGACCTGCTCAGCATGGCCTGTTCACCCATCTTAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00049992 True 1396 lncRNA 0.44 3 24438597 24452013

Neighbor

gene id symbol gene type direction distance location
XLOC_025326 pvalb6 coding upstream 3692 24297482 ~ 24434905 (+)
XLOC_025325 pdgfbb coding upstream 141178 24275597 ~ 24297419 (+)
XLOC_025324 zgc:123244 coding upstream 212569 24220354 ~ 24226028 (+)
XLOC_025322 adsl coding upstream 219975 24207243 ~ 24218622 (+)
XLOC_025323 NA coding upstream 221086 24217188 ~ 24217511 (+)
XLOC_025328 cbx6b coding downstream 6191 24458204 ~ 24464794 (+)
XLOC_025329 nptxra coding downstream 30986 24482999 ~ 24501796 (+)
XLOC_025330 dnal4a coding downstream 59946 24511959 ~ 24518496 (+)
XLOC_025331 sp100.1 coding downstream 85010 24537023 ~ 24555259 (+)
XLOC_025332 sp100.2 coding downstream 104627 24556640 ~ 24568002 (+)
XLOC_025429 BX649540.1 misc downstream 5796726 30248739 ~ 30249036 (+)
XLOC_025319 CR790362.1 non-coding upstream 254171 24161869 ~ 24184426 (+)
XLOC_025317 NA non-coding upstream 305112 24121201 ~ 24133485 (+)
XLOC_025316 dre-mir-152 non-coding upstream 342561 24095957 ~ 24096036 (+)
XLOC_025313 NA non-coding upstream 470631 23930446 ~ 23967966 (+)
XLOC_025342 NA non-coding downstream 478567 24930580 ~ 24936255 (+)
XLOC_025344 CR936416.1 non-coding downstream 603963 25055976 ~ 25060120 (+)
XLOC_025351 NA non-coding downstream 856697 25308710 ~ 25308964 (+)
XLOC_025353 NA non-coding downstream 1120765 25572778 ~ 25573533 (+)
XLOC_025354 NA non-coding downstream 1151655 25603668 ~ 25624618 (+)

Expression


Co-expression Network