G600881


Basic Information

Item Value
gene id G600881
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 35001880 ~ 35055228 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU684541
tctctctctctctctgtctctctctgtctctctctctgtctctctctctgtctcgctctctctgtctctctctctgtctctctctctctgtctctctctctctctgtgtgtctctctctctgtctctctctctctctctctctctgtgtgtctctctctctgtctctctctctctgtctctctctctgtctctctctctctgtgtgtctctctctctgtctctctctctccctctctctctctctcactctctctctctctatctctccctctctctcgctctctgtgtctctctctctgtctctctctctctctctctctctctctctctctctctctctctgtctctctctctctctctctctcatcttcaaTCTTCCCTCGTTCC
>TU684544
ACCTGTAGAGTAACACGGGGTTAACTGGTTCAATATCTATGATGCCCAAcacctcccccccccacacaactCACTGACAAACATACTGCGCTAAGCAAGTCACTCCACCCAACCTGATACACGTTGTTATATTGAGACAGAAAACAGGGTAGTGCTATACAAAATAAATGTCTTCCCCTGAATATACAAAATtcactatgtttctctctctgtctctctctctctgtctctctctctctgtctctctctctccatctctctatgcctccctgtctgtctgtctctctctctgtcactctctctgtctctctctctctgtatctctctctctctttctctctctctctgtctctctctctgtctctctctctctctgctctctctgctctctctctctctctctctctctctctctctctctctccctctctccctttctctttctcactctgtctctctctctctctgtccctctctctctcgctctctctctctctctctctccgctctctctctctgtctctctctctctctgtctctctctctctctctctctccccctctctctctctctctctccctctctctttctctctatgtctttctctctctctctctctgtctctctctctctctctgtctctctctctctctctctctctctctctctctctctctctctgtctctctctctctctctctctcatcttcaaTCTTCCCTCGTTCC
>TU684542
ccccccccccacacaactCACTGACAAACATACTGCGCTAAGCAAGTCACTCCACCCAACCTGATACACGTTGTTATATTGAGACAGAAAACAGGGTAGTGCTATACAAAATAAATGTCTTCCCCTGAATATACAAAATtcactatgtttctctctctgtctctctctctctgtctctctctctctgtctctctctctccatctctctatgcctccctgtctgtctgtctctctctctgtcactctctctgtctctctctctctgtatctctctctctctttctctctctctctgtctctctctctgtctctctctctctctgctctctctgctctctctctctctctctctctctctctctctctctctccctctctccctttctctttctcactctgtctctctctctctctgtccctctctctctcgctctctctctctctctctctccgctctctctctctgtctctctctctctctgtctctctctctctctctctctccccctctctctctctctctctccctctctctttctctctatgtctttctctctctctctctctgtctctctctctctctctgtctctctctctctgtctctctctctctg
>TU684545
ccccccccccacacaactCACTGACAAACATACTGCGCTAAGCAAGTCACTCCACCCAACCTGATACACGTTGTTATATTGAGACAGAAAACAGGGTAGTGCTATACAAAATAAATGTCTTCCCCTGAATATACAAAATtcactatgtttctctctctgtctctctctctctgtctctctctctctgtctctctctctccatctctctatgcctccctgtctgtctgtctctctctctgtcactctctctgtctctctctctctgtatctctctctctctttctctctctctctgtctctctctctgtctctctctctctctgctctctctgctctctctctctctctctctctctctctctctctctctctctctctctctcgctctctctctctctctctgtctctctctctctctctctctctctctctctctctctc
>TU684535
ACCTGTAGAGTAACACGGGGTTAACTGGTTCAATATCTATGATGCCCAAcacctccccccccccacacaactCACTGACAAACATACTGCGCTAAGCAAGTCACTCCACCCAACCTGATACACGTTGTTATATTGAGACAGAAAACAGGGTAGTGCTATACAAAATAAATGTCTTCCCCTGAATATACAAAATtcactatgtttctctctctctgtctctctctctctgtctctctctctttctctctctctctctgtctctctctctctctctctctctttctctctctcaaacagaATGAAAATGATGATATAAAATAATGCATTTTTAAAGCTATAAATCTATTTGTTTTAGCATGCTGCTCCGTTGTTGTGTCCATCTCCTGCCGTTGAACAGAGGAAACCTCCACCTCCTGACTGGAGTGGGAAAACAATGGGGAAAAAACGATGACCTTGTTGTTTGAATTATCTTATGCACATGCCTCTCTTGTGTGATACAGATATTATTGTGT
>TU684538
ACCTGTAGAGTAACACGGGGTTAACTGGTTCAATATCTATGATGCCCAAcacctcccccccccacacaactCACTGACAAACATACTGCGCTAAGCAAGTCACTCCACCCAACCTGATACACGTTGTTATATTGAGACAGAAAACAGGGTAGTGCTATACAAAATAAATGTCTTCCCCTGAATATACAAAATtcactatgtttctctctctgtctctctctctctgtctctctctctctgtctctctctctccatctctctatgcctccctgtctgtctgtctctctctctgtcactctctctgtctctctctctctgtatctctctctctctttctctctctctctgtctctctctctgtctctctctctctctgctctctctgctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctttctctctctcaaacagaATGAAAATGATGATATAAAATAATGCATTTTTAAAGCTATAAATCTATTTGTTTTAGCATGCTGCTCCGTTGTTGTGTCCATCTCCTGCCGTTGAACAGAGGAAACCTCCACCTCCTGACTGGAGTGGGAAAACAATGGGGAAAAAACGATGACCTTGTTGTTTGAATTATCTTATGCACATGCCTCTCTTGTGTGATACAGATATTATTGTGT

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU684541 False 388 lncRNA 0.51 2 35001880 35002693
TU684544 False 727 TUCP 0.48 4 35001880 35055228
TU684542 False 614 TUCP 0.49 3 35002480 35055133
TU684545 False 441 lncRNA 0.48 2 35019451 35055133
TU684535 False 512 lncRNA 0.41 3 35054087 35055228
TU684538 True 677 lncRNA 0.43 3 35054087 35055228

Neighbor

gene id symbol gene type direction distance location
abraa LOC106582659 coding downstream 1043555 33951832 ~ 33958325 (-)
ywhaba LOC100136192 coding downstream 1166022 33817223 ~ 33835858 (-)
LOC110527679 LOC106565035 coding downstream 1226972 33770050 ~ 33774908 (-)
LOC110527676 stk4 coding downstream 1255180 33677344 ~ 33746700 (-)
LOC118965409 NA coding downstream 1500619 33501207 ~ 33501261 (-)
LOC118965352 NA coding upstream 44179 35099407 ~ 35200098 (-)
LOC118965353 NA coding upstream 557161 35612389 ~ 35612805 (-)
LOC110527685 LOC106582661 coding upstream 1482910 36538138 ~ 36559214 (-)
LOC110528947 LOC106582664 coding upstream 1683463 36738691 ~ 36858144 (-)
LOC110527694 LOC106582668 coding upstream 1976046 37031274 ~ 37038809 (-)
G600875 NA non-coding downstream 22454 34978035 ~ 34979426 (-)
G600873 NA non-coding downstream 32232 34967649 ~ 34969648 (-)
G600869 NA non-coding downstream 43396 34958281 ~ 34958484 (-)
G600867 NA non-coding downstream 54268 34947343 ~ 34947612 (-)
G600862 NA non-coding downstream 64608 34936599 ~ 34937272 (-)
G600901 NA non-coding upstream 16696 35071924 ~ 35072179 (-)
G600905 NA non-coding upstream 78901 35134129 ~ 35134340 (-)
G600912 NA non-coding upstream 95121 35150349 ~ 35150980 (-)
G600913 NA non-coding upstream 98050 35153278 ~ 35153577 (-)
G600917 NA non-coding upstream 104781 35160009 ~ 35160209 (-)
G600872 NA other downstream 35094 34965447 ~ 34966786 (-)
G600721 NA other downstream 387005 34614492 ~ 34614875 (-)
G599788 NA other downstream 1324583 33674546 ~ 33677297 (-)
G599058 NA other downstream 1762085 33237359 ~ 33239795 (-)
G601245 NA other upstream 705471 35760699 ~ 35761270 (-)
G604485 NA other upstream 3533927 38589155 ~ 38597519 (-)
G604484 NA other upstream 3534189 38584293 ~ 38639400 (-)
LOC110527723 LOC106582696 other upstream 4007777 39063005 ~ 39123578 (-)
G606135 NA other upstream 4783663 39838891 ~ 39841331 (-)

Expression


Co-expression Network