XLOC_025328 (cbx6b)


Basic Information

Item Value
gene id XLOC_025328
gene name cbx6b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 24458204 ~ 24464794 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00049993
GTTTTTGTGGTTGGTTCACTCGCTCCTCCACGGCGCAGGATCTCCATCGCTACCGCGGAAAACCAGTCTCTGCTGTCCAATAAAGATGGAGCTGTCCGCGGCAGGGGATCGTGTGTTTGCCGCTGAGGCCATCCTGAAGCGCCGCGTCCGTAAGAGAGCGAGAGCAAGAGATGTACGGACCCAAAAAGAGAGGCCCAAAACCTAAGACACTGCTTTTAAAGTCAAGAGCACAAGCCGAGTCCCCACGAGTACCAGAGTTCAAGCATAGTCGTCCTCAACCTCATTCCAAAccacctcctcctccacctccggCTGCACCATCCTACACCCCGACTGCCCCTTCCAACGCTAAACTGCAGTCAGGCACTGCTCAGCCCAAACTGAAAAAAGACATTCACCGTTGCCATCGCATGGCACGTCGCCCCTTGCCTCGTCAGGACCACACAGTTGGTCCCTCCGGTCCTTTTTCATCCCGCCCAACAGTCAGTGCATTTTCAGAAACAGTCCGTATTCTCAACCGAAAAGTCAAACCGAGAGAAGTGAAGAAAGGACGAGTCATTCTAAACCTCAAAGTGCTTGACAAAGCTGAAAACACTGCAGTTGCTAATAACAAAAGGACACATGTGCCCTCAACCCAACAGTCCCATTTTGGACGACAGAAGATTCCATCCCGCAACAGGGTAATTGGGAAAAACAGGCGGTTTGGTGAAGTATCCTACCGAGGAATCCAGCCTCCCATTCGGGGTTCTGGA
>TCONS_00049994
ATGGAGCTGTCCGCGGCAGGGGATCGTGTGTTTGCCGCTGAGGCCATCCTGAAGCGCCGCGTCCGTAAGGGAAGGATGGAATACCTAGTGAAATGGAAAGGATGGGCAATAAAGTACAGCACATGGGAACCCGAGGAGAACATCCTGGATGAGCGACTCGTTGCGGCGTTTGAACAaaaAGAGCGAGAGCAAGAGATGTACGGACCCAAAAAGAGAGGCCCAAAACCTAAGACACTGCTTTTAAAGTCAAGAGCACAAGCCGAGTCCCCACGAGTACCAGAGTTCAAGCATAGTCGTCCTCAACCTCATTCCAAAccacctcctcctccacctccggCTGCACCATCCTACACCCCGACTGCCCCTTCCAACGCTAAACTGCAGTCAGGCACTGCTCAGCCCAAACTGAAAAAAGACATTCACCGTTGCCATCGCATGGCACGTCGCCCCTTGCCTCGTCAGGACCACACAGTTGGTCCCTCCGGTCCTTTTTCATCCCGCCCAACAGTCAGTGCATTTTCAGAAACAGTCCGTATTCTCAACCGAAAAGTCAAACCGAGAGAAGTGAAGAAAGGACGAGTCATTCTAAACCTCAAAGTGCTTGACAAAGCTGAAAACACTGCAGTTGCTAATAACAAAAGGACACATGTGCCCTCAACCCAACAGTCCCATTTTGGACGACAGAAGATTCCATCCCGCAACAGGGTAATTGGGAAAAACAGGCGGTTTGGTGAAGTATCCTACCGAGGAATCCAGCCTCCCATTCGGGGTTCTGGATTTCCAGTTTTTGGGAAACTCTTTGATTCTCACTCTCTGAAAAATGCAGAGAGTGGAGAGAGTCGTAACAGCATGACTAACAATCTCTCTTCCTCCCAAAGTTCAAAGCTCCTAGATGTGTCCAAAGGTCAGAATCGTAATGAAGAACCTCCTCCATCGAATTCAAGCTCTGAAGTTTCGGATGGTGAACCACCTTCCCCAAGACAAACCCAATCGCAGCATTCCTCATTGCAACCCAAGGCCTCTTCAACCAAGTCCCCTTCGACTAAGGCCCCTGATCCTACCCTTCACAAACTTGGCACTCAACCAGTGGCATCAAAAAACAAAGACTCTGCTTCTTCAGCTCTTCCATCGTCACCTATGTTTTCCTCATCATCCTCTGCATCGACATCCTCTGAAGACAACGAACACATCCTAGACCTTTCCGTACCTCATGAAATGGACAGACGATTGCGGCGCCGCCATCCCTTCTCTGGCCGTCATCCGCTCAAGGTACCAGAGGTGCCCGTGTCAGAGGAGCCATCAGAGGAAGAGGAAGATTTAGACTGGCGCCCTGACATGACATCCCGGTGTGCAAATGTGGTCGTCACAGACATCACAGCTAACCTCCTTACCGTCACCATTAAAGAGTTCTGCCATCCGCCTTCTGCTTCTTCTCCTCCCTGCTACTCCAAAAATGTATCAACTCAAAACGACACACAGCAGCCAAAACAAAACCCCAACAAAACATGA
>TCONS_00049995
TTTTTACACTCAAGtcgttgtttgtttttgtttacaacaCAGCTTGCGTTTTTGAGGGAAGGATGGAATACCTAGTGAAATGGAAAGGATGGGCAATAAAGTACAGCACATGGGAACCCGAGGAGAACATCCTGGATGAGCGACTCGTTGCGGCGTTTGAACAaaaAGAGCGAGAGCAAGAGATGTACGGACCCAAAAAGAGAGGCCCAAAACCTAAGACACTGCTTTTAAAGTCAAGAGCACAAGCCGAGTCCCCACGAGTACCAGAGTTCAAGCATAGTCGTCCTCAACCTCATTCCAAAccacctcctcctccacctccggCTGCACCATCCTACACCCCGACTGCCCCTTCCAACGCTAAACTGCAGTCAGGCACTGCTCAGCCCAAACTGAAAAAAGACATTCACCGTTGCCATCGCATGGCACGTCGCCCCTTGCCTCGTCAGGACCACACAGTTGGTCCCTCCGGTCCTTTTTCATCCCGCCCAACAGTCAGTGCATTTTCAGAAACAGTCCGTATTCTCAACCGAAAAGTCAAACCGAGAGAAGTGAAGAAAGGACGAGTCATTCTAAACCTCAAAGTGCTTGACAAAGCTGAAAACACTGCAGTTGCTAATAACAAAAGGACACATGTGCCCTCAACCCAACAGTCCCATTTTGGACGACAGAAGATTCCATCCCGCAACAGGGTAATTGGGAAAAACAGGCGGTTTGGTGAAGTATCCTACCGAGGAATCCAGCCTCCCATTCGGGGTTCTGGATTTCCAGTTTTTGGGAAACTCTTTGATTCTCACTCTCTGAAAAATGCAGAGAGTGGAGAGAGTCGTAACAGCATGACTAACAATCTCTCTTCCTC
>TCONS_00049996
GGAAGGATGGAATACCTAGTGAAATGGAAAGGATGGGCAATAAAGTGAGTGAGCTGAAATAACATTCATTAGATAACCTTTGTAGCTAACGAGAGGTAGATGTTAAATGATTTGTGTATATTGCAGGTACAGCACATGGGAACCCGAGGAGAACATCCTGGATGAGCGACTCGTTGCGGCGTTTGAACAaaaAGAGCGAGAGCAAGAGATGTACGGACCCAAAAAGAGAGGCCCAAAACCTAAGACACTGCTTTTAAAGTCAAGAGCACAAGCCGAGTCCCCACGAGTACCAGAGTTCAAGCATAGTCGTCCTCAACCTCATTCCAAAccacctcctcctccacctccggCTGCACCATCCTACACCCCGACTGCCCCTTCCAACGCTAAACTGCAGTCAGGCACTGCTCAGCCCAAACTGAAAAAAGACATTCACCGTTGCCATCGCATGGCACGTCGCCCCTTGCCTCGTCAGGACCACACAGTTGGTCCCTCCGGTCCTTTTTCATCCCGCCCAACAGTCAGTGCATTTTCAGAAACAGTCCGTATTCTCAACCGAAAAGTCAAACCGAGAGAAGTGAAGAAAGGACGAGTCATTCTAAACCTCAAAGTGCTTGACAAAGCTGAAAACACTGCAGTTGCTAATAACAAAAGGACACATGTGCCCTCAACCCAACAGTCCCATTTTGGACGACAGAAGATTCCATCCCGCAACAGGGTAATTGGGAAAAACAGGCGGTTTGGTGAAGTATCCTACCGAGGAATCCAGCCTCCCATTCGGGGTTCTGGATTTCCAGTTTTTGGGAAACTCTTTGATTCTCACTCTCTGAAAAATGCAGAGAGTGGAGAGAGTCGTAACAGCATGACTAACAATCTCTCTTCCTCCCAAAGTTCAAAGCTCCTAGATGTGTCCAAAGGTCAGAATCGTAATGAAGAACCTCCTCCATCGAATTCAAGCTCTGAAGTTTCGGATGGTGAACCACCTTCCCCAAGACAAACCCAATCGCAGCATTCCTCATTGCAACCCAAGGCCTCTTCAACCAAGTCCCCTTCGACTAAGGCCCCTGATCCTACCCTTCACAAACTTGGCACTCAACCAGTGGCATCAAAAAACAAAGACTCTGCTTCTTCAGCTCTTCCATCGTCACCTATGTTTTCCTCATCATCCTCTGCATCGACATCCTCTGAAGACAACGAACACATCCTAGACCTTTCCGTACCTCATGAAATGGACAGACGATTGCGGCGCCGCCATCCCTTCTCTGGCCGTCATCCGCTCAAGGTACCAGAGGTGCCCGTGTCAGAGGAGCCATCAGAGGAAGAGGAAGATTTAGACTGGCGCCCTGACATGACATCCCGGTGTGCAAATGTGGTCGTCACAGACATCACAGCTAACCTCCTTACCGTCACCATTAAAGAGTTCTGCCATCCGCCTTCTGCTTCTTCTCCTCCCTGCTACTCCAAAAATGTATCAACTCAAAACGACACACAGCAGCCAAAACAAAACCCCAACAAAACATGA

Function

symbol description
cbx6b Acts upstream of or within hematopoietic progenitor cell differentiation. Predicted to be located in nucleus. Is expressed in several structures, including digestive system; eye; heart; pectoral fin bud; and pleuroperitoneal region. Orthologous to human CBX6 (chromobox 6).

GO:

id name namespace
GO:0002244 hematopoietic progenitor cell differentiation biological_process
GO:0005634 nucleus cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-110613-1 Acts upstream of or within hematopoietic progenitor cell differentiation. Predicted to be located in nucleus. Is expressed in several structures, including digestive system; eye; heart; pectoral fin bud; and pleuroperitoneal region. Orthologous to human CBX6 (chromobox 6).

Ensembl:

ensembl_id ENSDARG00000097543

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00049993 False 752 mRNA 0.53 3 24458204 24464062
TCONS_00049994 False 1509 mRNA 0.50 5 24458289 24464794
TCONS_00049995 False 859 mRNA 0.48 5 24458899 24464157
TCONS_00049996 True 1522 mRNA 0.49 3 24459709 24464794

Neighbor

gene id symbol gene type direction distance location
XLOC_025327 NA coding upstream 6191 24438597 ~ 24452013 (+)
XLOC_025326 pvalb6 coding upstream 23299 24297482 ~ 24434905 (+)
XLOC_025325 pdgfbb coding upstream 160785 24275597 ~ 24297419 (+)
XLOC_025324 zgc:123244 coding upstream 232176 24220354 ~ 24226028 (+)
XLOC_025322 adsl coding upstream 239582 24207243 ~ 24218622 (+)
XLOC_025329 nptxra coding downstream 18205 24482999 ~ 24501796 (+)
XLOC_025330 dnal4a coding downstream 47165 24511959 ~ 24518496 (+)
XLOC_025331 sp100.1 coding downstream 72229 24537023 ~ 24555259 (+)
XLOC_025332 sp100.2 coding downstream 91846 24556640 ~ 24568002 (+)
XLOC_025333 sp100.3 coding downstream 106369 24571163 ~ 24591510 (+)
XLOC_025429 BX649540.1 misc downstream 5783945 30248739 ~ 30249036 (+)
XLOC_025323 NA non-coding upstream 240693 24217188 ~ 24217511 (+)
XLOC_025319 CR790362.1 non-coding upstream 273778 24161869 ~ 24184426 (+)
XLOC_025317 NA non-coding upstream 324719 24121201 ~ 24133485 (+)
XLOC_025316 dre-mir-152 non-coding upstream 362168 24095957 ~ 24096036 (+)
XLOC_025342 NA non-coding downstream 465786 24930580 ~ 24936255 (+)
XLOC_025344 CR936416.1 non-coding downstream 591182 25055976 ~ 25060120 (+)
XLOC_025351 NA non-coding downstream 843916 25308710 ~ 25308964 (+)
XLOC_025353 NA non-coding downstream 1107984 25572778 ~ 25573533 (+)
XLOC_025354 NA non-coding downstream 1138874 25603668 ~ 25624618 (+)

Expression


Co-expression Network