XLOC_025332 (sp100.2)


Basic Information

Item Value
gene id XLOC_025332
gene name sp100.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 24556640 ~ 24568002 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050000
ATGCACTATGTGAagtatacaaacatatatatatgtaatttggAGGCAAAGACAGTTCTCTACTAGCTGAATTGAATCAAACTTTACGTCCTACTTCATTTTGAAACCGGTCATATTCACTTTCGATTCATCACTTCCGCGAACTGTCGCAGTATGAGCGAGATCTTCTCAATTGAAGCGGGAGATTTGGAAACGATAATAACTGTCTATTCGGTTCTTGTCAAGCCTAAAATATACAAAATCCTCCATTTTGCTTGGTCATTGACAGTGAACTGCCAAATTGAGTTGCTAACAGATGAGCAGTTGCTGTCTTTCTTCAACCAGAGGAAGAAGGATATTTCGTGCATTGAACAACCAAACATATTCCTGACACAACTGAGAGACCACAACCTGTTGCCGGAGACGCTTTTCCAGGCAGAAGGTGAATGCGTTGCACACTCGAGAGCAGAAGCAGAAAGGAGTCTGAGGTTTTGGACTGGCTGGGGAAAGAGAGATCTCAGGACATTCGTCGTTTCTGGCACTGTGTGCATTCTACGCCTGCTCATGGACATCCTGTCAGATGCTGGACCTCTAGATGCTGAGATGCTGACAAAAGAGAGTAAAGGAGCAGTGAACAAAGGGAAGGAAAAGAAAGACACCAGAAAGAAAAGTAAAGATGGCGTATATAGTGAGGATAGTGATGATCCGGGTACTTCTTCTGCTTCCAACGTGACTCCGAAAAAAAAAGCCAAGAAATCTTCATTCTCATCTCCTGTAAAGACAGACAACAATCAGGAGATTTGGATGTTTCCTAAATATAAGACTGAGCTGCCTGTAAAATGTGGAAACACAGAAGGCACTCTCCATCGGGATAAACTGGCCAATGGGGAGAAGTGTTTATTTGCTCAGGGACGCTGGTTCTCCCCAGGTGAATTTGAGAAGTTTGCAGGGAAGGAAAGAAGCAAAAACTGGAAAGTCAGCATCCGATGCGAAGGCACACCACTTAAAAAACTCATTGAGGCGAATCTTCTTCAGTGTAAACCGATGCAGAGAAAGCAGGGGACCTCTGTCCGAAAAAGCAAGAAAGTACAGATTGTGATCAGTTCATCTGAGGACTCCAGTCCAGaCTCAAGACCGTACTTTTCAGGAGGAGGATCACAGTTCAGAAGTAGAgttgatgatgatgaggaggaaGATGAGATGGTAGATCTGACTGTTTTCCAGGCTCATTCTTTACGAGTCACCTGTGTCTCACTCACTGGGACTCTGTACAAAAAACGGTTTGCCACAGGGAAGCGTGGAAAGAGTATACGAACTGAGGAACGCTGGTTTACTCCAGAGGAATTTGTAAAGGAGGAACCGACTCTCTCTGATGGATTCTGGAAAAAAGACATACGGTGTCATGGAAAAACTCTCAACTTTTTATGCGAGAAAAAGATCCTGCAGATTCATTCTGTTCTGTGTGAATGTGGGAAATGCAGCACTGATCCAAAAGACCTGGCAGACCAGAACAACGATGATGTGTGTTTTGCGTGTCACTCTGAGGGAGATCTGGTGTGTTGCGATGAATGTCCACGAGCTTTTCATGAATACTGTCACCTACCACCTGTACCCAAAGATGCATCTGGGGAATGgatttgcaccttttgcatgaTAAGAAAAAAGCAACAATTACAGAGCTCCAGCAACACGACTGAACAAGAAGTGTAACCTGAAGAGACATGCTACTTTATTGTTCatagattttaattattttaatatgatatTTTTGATATGTTTATGTGTATATTATTTGATTTTGTTGAACAAAACTAGTTCAAACCATGTTTGAGGACCATAACAGCATATTTtcaagatttgttttcttttcattagtTCATATTGTGCTTCATGATGCTTTGTTGTGTGCTGCATtaagcaaataaacaataaatggaTTGTGATTCATC

Function

symbol description
sp100.2 Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and metal ion binding activity. Predicted to act upstream of or within positive regulation of transcription by RNA polymerase II. Predicted to be located in cytoplasm and nucleus.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000102588

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050000 True 1928 mRNA 0.42 13 24556640 24568002

Neighbor

gene id symbol gene type direction distance location
XLOC_025331 sp100.1 coding upstream 1381 24537023 ~ 24555259 (+)
XLOC_025330 dnal4a coding upstream 38144 24511959 ~ 24518496 (+)
XLOC_025329 nptxra coding upstream 54844 24482999 ~ 24501796 (+)
XLOC_025328 cbx6b coding upstream 91846 24458204 ~ 24464794 (+)
XLOC_025327 NA coding upstream 104627 24438597 ~ 24452013 (+)
XLOC_025333 sp100.3 coding downstream 3161 24571163 ~ 24591510 (+)
XLOC_025334 si:dkey-68o6.5 coding downstream 27920 24595922 ~ 24603705 (+)
XLOC_025335 si:dkey-68o6.6 coding downstream 35921 24603923 ~ 24610004 (+)
XLOC_025336 zgc:171506 coding downstream 44189 24612191 ~ 24627802 (+)
XLOC_025337 si:dkey-68o6.8 coding downstream 66479 24634481 ~ 24638921 (+)
XLOC_025429 BX649540.1 misc downstream 5680737 30248739 ~ 30249036 (+)
XLOC_025323 NA non-coding upstream 339129 24217188 ~ 24217511 (+)
XLOC_025319 CR790362.1 non-coding upstream 372214 24161869 ~ 24184426 (+)
XLOC_025317 NA non-coding upstream 423155 24121201 ~ 24133485 (+)
XLOC_025316 dre-mir-152 non-coding upstream 460604 24095957 ~ 24096036 (+)
XLOC_025342 NA non-coding downstream 362578 24930580 ~ 24936255 (+)
XLOC_025344 CR936416.1 non-coding downstream 487974 25055976 ~ 25060120 (+)
XLOC_025351 NA non-coding downstream 740708 25308710 ~ 25308964 (+)
XLOC_025353 NA non-coding downstream 1004776 25572778 ~ 25573533 (+)
XLOC_025354 NA non-coding downstream 1035666 25603668 ~ 25624618 (+)

Expression


Co-expression Network