XLOC_025333 (sp100.3)


Basic Information

Item Value
gene id XLOC_025333
gene name sp100.3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 24571163 ~ 24591510 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050001
ATTCGCTTTCGTTTTATCAGTGAGCCTACGCGTCCCGTTGTGTGGAAGCTTTGTTTAATTCAGGCGGGAGATTTGGAAACAACAACCTATTCTGCACAGCTCGTGTCAAGCCAAAGATACACAACTCCATACAGCTTATTGACAGATCAGTTTATGGAATTCAACGGGCAGATGGACTTTCTTACTGATGAGCAGTTGCTGTCTGTCTTCCACCTCAAGAAGACGGAAATTTCGTGCATAGAACAACCGCTCATCTTCCTCACACAACTGAGAGACCACAACCTGTTGCCGGAGACGCGTTTCAAGAAGGTGAAAGGGATGCGCACTCGAGAGCAGAGGCAGCAAGGAGTCTATGATGTTCTGGAGTGgctggagagagagagatctcaggACATTCGGCGTTTCTGGCGATGTGTGTTTGAAGATCATATCGTGCAGAAGTACCCCACGCTACACCTGCTCAGGAAAAGCCTGCCAGAAACCGTAACCAAATTCTCTGAGGAACGTATAGGCATTGAGACACTGACAGAAAATAGTGGACAAAAGGAGAAGAACGGGACATACAACAGAAAGAGAAATGACAGAAGTGATGATCCGGGTTCTTCAGCCAAGAAACCCTCATTCTCACCTCATGAGAAAGGAAGCAAAGAGAGGATTTGGATGCTTTCTAGATATAAAACTCAGCTGCCTGTAAAGTGTGGGGATAAAGAGGGCATTCTCTATCGAGACAAACTGGCCAAGGGAGAGAAGTGTATCAGAGAAGGGGCTCAGGGACGCTGGTTCTCCCCAAGTGAATTTGAGAAGTTTGCAGGGAAGGAAAGTAGCAGAAACTGGAAAGCCAGCATCCGCTGTGATGGCACACCACTTAAAAAACTCATTGAGGAGAATCATCTTCAGTGTCCACCGATGAAGAACAGAGATAGAACATCTGTCCGAAAAAGCAAGAAAAACATTTCTATTAGCTCATCTGAGAGCTCCAGTACAGATTCAGAAACCAGCGCCAGTTCAGAAGAGGAAAGTGAGGCGGAAGACGTCCAAAAGCAGAGCAAGAGAGCAGGACTAAGATCACAGTTTAGAAGTGGAGTTGATGATTATGGGGAGGAGGAAGATGAGATGGTAGATCTGACTGTTTTTCAAGCACCATCTTTACCAGTCTCCTGTGTCTCACTCATTGGGACTCTGTTCAAAGACAGATTTGCCACAGGGAGGTGTGGGAAGAGTATACGGACCAAGCAACACTGGTTTACTCCGGAGGAATTTGTAAAGGAGGAACCAACTCTCTCTGATGGACTCTGGAAAAGAGATATACTGTGCCATGGAAAAACTCTCAACTTTTTATGCGAGAAAAAGATCCTGGACATCCATCCGAAAAACTGTACATGTGTGAAGTGCAGCACTAATCCAGATGATCTGATGGACCAGAACAACGATGATGAGTGTAATGTGTGTCACTCTGAGGGGAATCTGGTGTGTTGTGATAAATGTCCACGAGCTTTTCATCCAGACTGTCACCTACCTGCTGTAAATGAAGAAGACTCGGCCTGGCAGTGGATTTGTACCTTTTGCATGTTAAGAACCCGTCAACGAGGGTGTGCCTCCAGAAACATGACTGAACAAGAAGCTTTTGATGTTCCAATATCTCAATGCagactgCAGTGCCACTACCTGCTGTTATGTATGTACAATGAAGATATCCAGAAGGTGTTTGTAAAGGATCCACGCCCAAATGTGAGAAGATACTCTGAGTTCATATCCGATCCAATGTGGCTGAACAGAATAAAGCAGAAGTTGAAAGATAACATGTATCAGAAGTTTGGAGAGTTTGCCTCTGACTTTCAGCTCATTTTCAGCAACTGCAGGAAATTTAATCGGGATAACAAATTTGGCCAGTTGGGTGCCAAACTGAAAGAAATCTTTGAGGATGAGATCCAGAAAATCTTCTTTATCCAATAAGggttctctttttcttttgtctttcAAAGTTGATGGAGAAATCTAAGCAGCTTTGAATATTATAATGTAAATGAGATGTATTGCATTTCTTATCCCACTGCCCTAGGATGAATACTTTGGTTAATATTCTCGCTGCACACCTTTTTTATAATTCAATTTTTCTATGCagtcatatattatttacaacataGGTTACAGATGGTCATATATTATGTCTGTATTATCAGCCTTTTGTCCTCCTTATAGATTCTAATTACTGTCTACTGACTTTAAGGTGAAGGGTGTCatttttataaatgcaaaaaGTATTCTTGCACTTTTTCCTCATACGTTAAGCATTGAATAGGTTATTTGTAAAATGAATTCCATGATTGACCTAAAAAACCtatatttttattgacttttgttattaattattttacttgtttttagtCTTCtgttctgttgttttgttttgttttgatgctttCATGTACAAAAAAATGAGAATAATTTTGGCTGAGGATCGTAAACATTGTAAACAATCTGGAATTTGTTTCCAATTTTGGTGTTGGGTAAATTTACGTTAGCTTTTATGTtaggctttttttttaattgtaagtaAAACAGACACTTTAATAtgatgtttatatttaatataatgtacTTTAATAAAAGTAAGACCATC
>TCONS_00050002
GAGAATCATCTTCAGTGTCCACCGATGAAGAACAGAGATAGAACATCTGTCCGAAAAGTATGATTCCTCCCTCTATTTGGTTTGTTGCTCCTCTTTTTTATTTTGGACATTCATCAAAACACTGTGTTTTAATCCTGTAGAGCAAGAAAAACATTTCTATTAGCTCATCTGAGAGCTCCAGTACAGGTGAGGCAGAATCATCCATCATTACATCATTGTTGGGATAAATTGCAGATcgtctgtgtgtttcctcagtaagctggagctccaggaaggcaacaacaactgagagatgtgaatccaacagtttattgctctcttctaaagaagtctggggtattcccagcttttatacatcatactcagggttacatgggctatgaatacgtgcaaatattcagctcagttaggcagaacaattttatccagtgctcaagaatgtcaaggcgcaacgtcaaggcacctagtacagggacaacttacaataagataagacacagttacaaaacagaatatttggaGAGTGACTACATGGATATTTCTTTCAATCATTCACACTCCTTGTCTGTTGATTTCTGAAACCAGCCGTGTGTTTTACTCCTCAAGATTCAGAAACCAGCGCCAGTTCAGAAGAGGAAAGTGAGGCGGAAGACGTCCAAAAGCAGAGCAAGAGAGCAGGACTAAGATCACAGTTTAGAAGTGGAGTTGATGATTATGGGGAGGAGGAAGATGAGATGGTAGATCTGACTGTTTTTCAAGCACCATCTTTACCAGTCTCCTGTGTCTCACTCATTGGGACTCTGTTCAAAGACAGATTTGCCACAGGGAGGTGTGGGAAGAGTATACGGACCAAGCAACACTGGTTTACTCCGGAGGAATTTGTAAAGGAGGAACCAACTCTCTCTGATGGACTCTGGAAAAGAGATATACTGTGCCATGGAAAAACTCTCAACTTTTTATGCGAGAAAAAGATCCTGGACATCCATCCGAAAAACTGTACATGTGTGAAGTGCAGCACTAATCCAGATGATCTGATGGACCAGAACAACGATGATGAGTGTAATGTGTGTCACTCTGAGGGGAATCTGGTGTGTTGTGATAAATGTCCACGAGCTTTTCATCCAGACTGTCACCTACCTGCTGTAAATGAAGAAGACTCGGCCTGGCAGTGGATTTGTACCTTTTGCATGTTAAGAACCCGTCAACGAGGGTGTGCCTCCAGAAACATGACTGAACAAGAAGCTTTTGATGTTCCAATATCTCAATGCagactgCAGTGCCACTACCTGCTGTTATGTATGTACAATGAAGATATCCAGAAGGTGTTTGTAAAGGATCCACGCCCAAATGTGAGAAGATACTCTGAGTTCATATCCGATCCAATGTGGCTGAACAGAATAAAGCAGAAGTTGAAAGATAACATGTATCAGAAGTTTGGAGAGTTTGCCTCTGACTTTCAGCTCATTTTCAGCAACTGCAGGAAATTTAATCGGGTAAGattttatgataacataatacagacatcaacatcaacaacaaaataTTTGATCTATACATGGACCTATCTGTGCGTGAttattgaattttgttttctctttctctcgaAAGGATAACAAATTTGGCCAGTTGGGTGCCAAACTGAAAGAAATCTTTGAGGATGAGATCCAGAAAATCTTCTTTATCCAATAAGggttctctttttcttttgtctttcAAAGTTGATGGAGAAATCTAAGCAGCTTTGAATATTATAATGTAAATGAGATGTATTGCATTTCTTATCCCACTGCCCTAGGATGAATACTTTGGTTAATATTCTCGCTGCACACCTTTTTTATAATTCAATTTTTCTATGCagtcatatattatttacaacataGGTTACAGATGGTCATATATTATGTCTGTATTATCAGCCTTTTGTCCTCCTTATAGATTCTAATTACTGTCTACTGACTTTAAGGTGAAGGGTGTCatttttataaatgcaaaaaGTATTCTTGCACTTTTTCCTCATACGTTAAGCATTGAATAGGTTATTTGTAAAATGAATTCCATGATTGACCTAAAAAACCtatatttttattgacttttgttattaattattttacttgtttttagtCTTCtgttctgttgttttgttttgttttgatgctttCATGTACAAAAAAATGAGAATAATTTTGGCTGAGGATCGTAAACATTGTAAACAATCTGGAATTTGTTTCCAATTTTGGTGTTGGGTAAATTTACGTTAGCTTTTATGTtaggctttttttttaattgtaagtaAAACAGACACTTTAATAtgatgtttatatttaatataatgtacTTTAATAAAAGTAAGACCATCTCTGTGTGTTTAATATGTCAACAATGGTTCTTGTAGTTATGTCTGAAGTTTTTGTATATAAACATTTAGTGGGTGTCCTCTGTAAATCATGGTGGTGGTGGAAAATTATATTCATTATGTTTAGCTCAGATTTACACCTAGTATTAAGATTTTTAGTACCAGGTATTTTATCCATATCAAATAATGAATTGACAAtgctaaatacaggtgtaaaAATGGTCAAGGTTTTGAGGTTGTTCACTTTTGACCACATTTAGACATAAACAGTGACAAATGTGTAGTGTTCAATCAGCAACTAGCAAACAATTATTGTTAACTTGCAatttatacagtaaataacttgaattcattcattcatatactaaattaaaaaatattgtatttaatcgATTCATAACCTAAAGTTTGTAATCTCACAAGTCCTGAAATGCATGCtttctatttaatatttatttatattgcttttttatttgttatatcactcagttttctttttttacattttaaattattattttttttaaatgtaaaattaatttacaactgaaaaaaaaaaatttaatataaatttgactgctggactgctccacgatggatattttattttgtaataataatattacataagATTACATTATAATATTGCATTTGATTGTATACTAAATGAGATTTAACTacgttaaaattgtatttgtttaactctcaccatacaaaatatggtaGAAAATGATGTTATACATGGTTTATAGTTGTAATTTATACTTCTAAATAATGGGGGGGGGATTTCCTGTGTccctaagcagctgcttaccttgcttattggttaaatctgccCTGATCACAATTTGTGGCAGTGACGAAGGCATACATGTTCTCATGAATGAGCGATTTGGCATTTTCCCATGATATGTAATCCTTTAATCTCCCAGTAGCAAGACAGCTAACGAAATAGGCCTGAATGCACTATTGTTTACTCTATTACATACCCTTGACCCAGATTAAAGATgccagaacaacagcatattcaaacaaatattttttcactCACAATTAAGCtaaacatttcacattttaacagcaaccaacaacaacaaaaagcaatGCTTGACTGTAGTTAACTGTAATGTTATCATAGCCGTGGGGACCCTGGTCGATTTGCCATATTAGCAGTAGCAGATGCAGCAGTCAATTTAAGTTTTCCTTTTGAACtaatttgggtaacactttattttaatggtccatttgagtattagtagactgtctgcttaatatctttttatactgctccttcaacaaatTGAACAGACTAAAAGAAAACTTAGTGCATGTCAATTTACCCTAATCCTCACCCCAACCTACCtgtctatttataatctaatgagaattagtgaGCATAcggatgcaatgtaacttaaattcaacaaacataccatctcaaaataaaatgtgtgacCCTAATTTGCTTTTGCAGAACAGAGAACTGCATCTTTTTAGCATGTTGACAGTGACCTTTAAAACCTTGGGGTTACTATACCGTCAAGTTAGGCTTTactgttacaatttttttttttatttgatcaatCGCGCCCACTGGTGAACAAAAGTAGAATAACTACTAAAAACATCAGAAAGAACAAAAGTTTAGCTATAGGTTAATTTGAGGATTAATTACTAACAGTGTGCATCTGTTCAGCTCGGTTGTTGACCGTATGATACACATGTCAATGTCGAAATGTGTATGGCAACACTTTTGATAAGAcgtacaaaactttttttttatccaaggtaatATCCCAGAACCTGCATACTGCGGTG

Function

symbol description
sp100.3 Predicted to enable DNA binding activity and metal ion binding activity. Predicted to be located in membrane and nucleus. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in hepatic venoocclusive disease with immunodeficiency and tuberculosis. Orthologous to several human genes including SP110 (SP110 nuclear body protein) and SP140L (SP140 nuclear body protein like).

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-130530-997 Predicted to enable DNA binding activity and metal ion binding activity. Predicted to be located in membrane and nucleus. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in hepatic venoocclusive disease with immunodeficiency and tuberculosis. Orthologous to several human genes including SP110 (SP110 nuclear body protein) and SP140L (SP140 nuclear body protein like).

Ensembl:

ensembl_id ENSDARG00000090449

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050001 False 2620 mRNA 0.41 16 24571163 24589695
TCONS_00050002 True 4171 mRNA 0.35 7 24577021 24591510

Neighbor

gene id symbol gene type direction distance location
XLOC_025332 sp100.2 coding upstream 3161 24556640 ~ 24568002 (+)
XLOC_025331 sp100.1 coding upstream 15904 24537023 ~ 24555259 (+)
XLOC_025330 dnal4a coding upstream 52667 24511959 ~ 24518496 (+)
XLOC_025329 nptxra coding upstream 69367 24482999 ~ 24501796 (+)
XLOC_025328 cbx6b coding upstream 106369 24458204 ~ 24464794 (+)
XLOC_025334 si:dkey-68o6.5 coding downstream 4412 24595922 ~ 24603705 (+)
XLOC_025335 si:dkey-68o6.6 coding downstream 12413 24603923 ~ 24610004 (+)
XLOC_025336 zgc:171506 coding downstream 20681 24612191 ~ 24627802 (+)
XLOC_025337 si:dkey-68o6.8 coding downstream 42971 24634481 ~ 24638921 (+)
XLOC_025338 zgc:113411 coding downstream 49436 24640946 ~ 24649894 (+)
XLOC_025429 BX649540.1 misc downstream 5657229 30248739 ~ 30249036 (+)
XLOC_025327 NA non-coding upstream 119150 24438597 ~ 24452013 (+)
XLOC_025323 NA non-coding upstream 353652 24217188 ~ 24217511 (+)
XLOC_025319 CR790362.1 non-coding upstream 386737 24161869 ~ 24184426 (+)
XLOC_025317 NA non-coding upstream 437678 24121201 ~ 24133485 (+)
XLOC_025316 dre-mir-152 non-coding upstream 475127 24095957 ~ 24096036 (+)
XLOC_025342 NA non-coding downstream 339070 24930580 ~ 24936255 (+)
XLOC_025344 CR936416.1 non-coding downstream 464466 25055976 ~ 25060120 (+)
XLOC_025351 NA non-coding downstream 717200 25308710 ~ 25308964 (+)
XLOC_025353 NA non-coding downstream 981268 25572778 ~ 25573533 (+)
XLOC_025354 NA non-coding downstream 1012158 25603668 ~ 25624618 (+)

Expression


Co-expression Network