XLOC_025335 (si:dkey-68o6.6)


Basic Information

Item Value
gene id XLOC_025335
gene name si:dkey-68o6.6
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 24603923 ~ 24610004 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050004
GAGCGTGCAAAAGGAGGGCAGATTagatgtgtgtatgcatgtgtacgTAACTCTGCTAAAAGAAGATCtagaaaaataaaactacaagTCGAAGACACAGCAAGGACATGGATGAAGAGTCTGTGACAGACACCGAGTCTGAATCAGCATCTCAATGGGATCCAAAGAGTAGCACTGAATCTGAGAGCTGGAGTGAGGGCAGCAGAGAAAACagaagtaaaaaaagaaagaaaacaagaaaacaaacctCGTTCACCAAGTTTTCAAGACAATCAATTGAAAAGAAACGTGAACTTGATGTCACATGTGGGGATAAAGAAGGCATCCTGAATCTGGAGAAGTATAATAATGACATTCAGGAGTGTATCTTCAGTGAAGGCCGGTGGTTTACGCCGAGCGGCTTTGAGAAGTTTGGAGGAAGGGAAAGAAGCAAGAAGTGGAAAAACAGCATCCGATGTGATGGCCTTCCAATCCAAGAGCTTTTGGATATGATGCAGACATATGGAGACAGTGCAAGCACTGTGCAGAATGAAACTATGACCTCTGAATTATTAAACTCTTTAAAAGATTTCCCAGAGTCATGGAAAAGCTTGTTTTCCAAAACTCTAAAAGTACATGTGTGTAGAAATGAAGGGGAAATACTCCGGAAGCAAACAACCCAGACAGCACATACAGACAGTTCTTCAGATGAGTCTGTATCTGTTGCTGAAAGAGTTAAAACGAGCAGGAGAGATTTTGTGATTTCAACTGAAACTGTCAGCAAAATGGTGGAATCTTCTAGCAATGATGAAGCACATACAGACAGTTCTTCAGATGAGTCTGTATCTGTTGCTGAAAGAGTTAAAACGaacAGGAGAGATTTTACGATTTCAACTgaaaatgtcagcaaaatgaTCACTCAACAGGTGGAATCTACTCACAATGATAAAGGTTTGTATTTCTCATCATTTCCTCTGTATGCAGTTTTTCCTCTGTTTCCCATTTCTTAAATTCCCAATTTTTTTGTAGTATTGTGACAGAAGTTGGAggatatattttaaatttctgctactaaatagaaaaataatagtTATAGATAACTGTTAACCTACGTAACATCCAATCTTTCAAATATACCATTaagtatagaaaatataaaatgaaatacaaaaaaaatctgtcagtATTAAATTTTTCGTTTTATacacatggc

Function

symbol description
si:dkey-68o6.6 Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and metal ion binding activity. Predicted to act upstream of or within positive regulation of transcription by RNA polymerase II. Predicted to be located in cytoplasm.

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0003713 transcription coactivator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-141212-381 Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and metal ion binding activity. Predicted to act upstream of or within positive regulation of transcription by RNA polymerase II. Predicted to be located in cytoplasm.

Ensembl:

ensembl_id ENSDARG00000104350

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050004 True 1192 mRNA 0.37 9 24603923 24610004

Neighbor

gene id symbol gene type direction distance location
XLOC_025334 si:dkey-68o6.5 coding upstream 218 24595922 ~ 24603705 (+)
XLOC_025333 sp100.3 coding upstream 12413 24571163 ~ 24591510 (+)
XLOC_025332 sp100.2 coding upstream 35921 24556640 ~ 24568002 (+)
XLOC_025331 sp100.1 coding upstream 48664 24537023 ~ 24555259 (+)
XLOC_025330 dnal4a coding upstream 85427 24511959 ~ 24518496 (+)
XLOC_025336 zgc:171506 coding downstream 2187 24612191 ~ 24627802 (+)
XLOC_025337 si:dkey-68o6.8 coding downstream 24477 24634481 ~ 24638921 (+)
XLOC_025338 zgc:113411 coding downstream 30942 24640946 ~ 24649894 (+)
XLOC_025339 zmp:0000000912 coding downstream 45639 24655643 ~ 24660328 (+)
XLOC_025340 slc25a17 coding downstream 71851 24681855 ~ 24692363 (+)
XLOC_025429 BX649540.1 misc downstream 5638735 30248739 ~ 30249036 (+)
XLOC_025327 NA non-coding upstream 151910 24438597 ~ 24452013 (+)
XLOC_025323 NA non-coding upstream 386412 24217188 ~ 24217511 (+)
XLOC_025319 CR790362.1 non-coding upstream 419497 24161869 ~ 24184426 (+)
XLOC_025317 NA non-coding upstream 470438 24121201 ~ 24133485 (+)
XLOC_025316 dre-mir-152 non-coding upstream 507887 24095957 ~ 24096036 (+)
XLOC_025342 NA non-coding downstream 320576 24930580 ~ 24936255 (+)
XLOC_025344 CR936416.1 non-coding downstream 445972 25055976 ~ 25060120 (+)
XLOC_025351 NA non-coding downstream 698706 25308710 ~ 25308964 (+)
XLOC_025353 NA non-coding downstream 962774 25572778 ~ 25573533 (+)
XLOC_025354 NA non-coding downstream 993664 25603668 ~ 25624618 (+)

Expression


Co-expression Network