XLOC_025337 (si:dkey-68o6.8)


Basic Information

Item Value
gene id XLOC_025337
gene name si:dkey-68o6.8
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 24634481 ~ 24638921 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050007
ATCTGTTTTCTTTCGCAGAACTGACAGCATTAAAGACAGCATTATGGACTTAGGCTTTTTCACAGACGAaaagttgtttaatttttttttgccaaaacaaGACAAAGATGTCTACATTAGAGAGCCCACTAATGTTCCTCCGCACTCTTAAGGACAATGAACTCATTGAAGATGAACTTTATCAAAAACTGGAGGTCAGCACTAATGATAGTGATTTATATAATGTGTTGGAGAGTATTCAAAAGCGTGGAATGAAGACTGTTAGAAAGTTCTGGAATTGTGTGGACCAAGAGCATATAGTACAGCGCTACCCACAAGTCTCTGAAATCATCTCGGAGCTGATGAAAGATCTTGAGAATCCACTAAACCAAAAAATAAGGCCAAGATCTGTAGATAAAAGCACGGGACAGGAAAGAGAGATTAAAAAGATAAAGATAGAGAGCATATCTGAGAGAAATGAAGCTGGGCCATCGTCACAAAGCACTTATTGCCAGAGGAAAATAGCTGAACATGTGGAAAGAGGTCTGCAATGCTCTCCAGACTCCAGGACAGAAGACTCAAGTTTTTTATTATCAACCTCTTCGGTAAAGCTCTGGGACATGCCTGAACACAAGAAATGGCTTCCTGTCACATGTGGAGAAGAAGAGGCCTTACTGGATAGAGAAGCACTGTTTGACAGAAAGAAGAATTGCATTGAACACAATGGAGAAATGATCACTCCTTTTACATTTGAGGAAAGGGGTGGAAAAGAATCCTGTAAGTCCTGGAAAACAAGTATATTATGCCAAGGGAAAACCGTCAGCAGTCTCATGGAGTTGGAAATATTGAAGATGCCGAAACGTAAGGGAAAGTTTACCCTTCGTAATTGA

Function

symbol description
si:dkey-68o6.8 Predicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within positive regulation of transcription by RNA polymerase II. Predicted to be located in cytoplasm. Predicted to be active in nucleus.

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0003713 transcription coactivator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-141212-374 Predicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within positive regulation of transcription by RNA polymerase II. Predicted to be located in cytoplasm. Predicted to be active in nucleus.

Ensembl:

ensembl_id ENSDARG00000104144

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050007 True 869 mRNA 0.40 7 24634481 24638921

Neighbor

gene id symbol gene type direction distance location
XLOC_025336 zgc:171506 coding upstream 6679 24612191 ~ 24627802 (+)
XLOC_025335 si:dkey-68o6.6 coding upstream 24477 24603923 ~ 24610004 (+)
XLOC_025334 si:dkey-68o6.5 coding upstream 30776 24595922 ~ 24603705 (+)
XLOC_025333 sp100.3 coding upstream 42971 24571163 ~ 24591510 (+)
XLOC_025332 sp100.2 coding upstream 66479 24556640 ~ 24568002 (+)
XLOC_025338 zgc:113411 coding downstream 2025 24640946 ~ 24649894 (+)
XLOC_025339 zmp:0000000912 coding downstream 16722 24655643 ~ 24660328 (+)
XLOC_025340 slc25a17 coding downstream 42934 24681855 ~ 24692363 (+)
XLOC_025341 mrtfaa coding downstream 69764 24708685 ~ 24765127 (+)
XLOC_025342 NA coding downstream 291659 24930580 ~ 24936255 (+)
XLOC_025429 BX649540.1 misc downstream 5609818 30248739 ~ 30249036 (+)
XLOC_025327 NA non-coding upstream 182468 24438597 ~ 24452013 (+)
XLOC_025323 NA non-coding upstream 416970 24217188 ~ 24217511 (+)
XLOC_025319 CR790362.1 non-coding upstream 450055 24161869 ~ 24184426 (+)
XLOC_025317 NA non-coding upstream 500996 24121201 ~ 24133485 (+)
XLOC_025316 dre-mir-152 non-coding upstream 538445 24095957 ~ 24096036 (+)
XLOC_025344 CR936416.1 non-coding downstream 417055 25055976 ~ 25060120 (+)
XLOC_025351 NA non-coding downstream 669789 25308710 ~ 25308964 (+)
XLOC_025353 NA non-coding downstream 933857 25572778 ~ 25573533 (+)
XLOC_025354 NA non-coding downstream 964747 25603668 ~ 25624618 (+)

Expression


Co-expression Network