XLOC_002534


Basic Information

Item Value
gene id XLOC_002534
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 4095871 ~ 4099183 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005981
GCTCACTTCTGGGTGACAGATTAGTTGTAAATGGGTCCCTGCGCCTGAGGTTAAGCTACCTTGGGTTGTTCATTATTCAACCATTAAGCCATCAAAGTAAACTCAACAGTCCATAAAAACAGCAATTCATCATGCTCTCACTGCAAGTCAATGAAGTTTACCTTCTTTGTTGTCACTCTGGCCCCGTGCTCGCTCCCAGTATCCCAGGCACTTGTCGTTACTGGGGTCCTCTATCAGAGCCTTATTGCCAGGGACATACCAGGTGGCATGCTGCTCTGTCATAAGAGAGTCAAGGTCAATGGTATTCACAGAGCTCTTGCCTGTAACCGGGCTAGAGTTGGCCAGGGTGCATTCTCCGTTTAGACTGGCCTGGCAGTCAGCCTTTTTGCTTGTTTTCCCTCCCATGGGTTGGTCCTCCGAGATGCTGAACTGCTGTCTTTGCAGCTGGATCTGAGCTTGCAAAATCTCCAGAGGATGAACCTCATCCTGCCCTGTGTTGCTCAATGGCGTTCGCACCTGTTCCATGCATGAAGCATCAGCATAGCTGGCCCTGTTTTCCGAGTTACACTTTACACCAGCTCTGCAGGGCCTTGGATCCTCGGTGCTGTAGTTAGGGCTGGCATCGTCTAAATAATCCATGCATGGCGAAACGCCGTCCGACTTGCCCACGCTTTGAATTCCGCTGTCCATAGAGGTGGCGAGGTCCGGCTTACCGAAAGAAGGGGAGACTAGAGTCCTCTCTGGGGTCTTACCTCGACTCTCCATGCCCATGCTCAAATTGGAGCCCTGCTGACCTGGGCTCACGACGGGGTTACCGCCACTAGGAGGTGAGAAGTTTCCAGGACTGATGTGCCCGCTGTCTCGTCTCTTCTTCCCCCTCCCTTTACCGTTGCCTGTTGCCATTTTCCCCTCACATCCAGACTCCATGCTGTCATTTGGGGAAAGGGTGCTCGCTTCCCTTTTCACCATCTGGCCCGTACCACTTTGACCCACCATCGTATTGTTGTTATTCCCAGAGCAAGGCGTTTGACTATTCTGAGAAGCATTGCTCTGGAAATACTCTGCCCCTGGGCCGCTACTGCCACTGCTATTTATGTCCTGCTCAACCTGACCTGCTTTGCGTTTGGCCTCGTTTTGACTTTTCTTATTAAAAGTCACATTGAGGTTCGGGGCCCCAAGCTTATTGACTGACAGGTGCTGGCTGGAGAGGTACTCAGGATGGGCGGGATAGTTCCCTGGAGAGGAGCTAAATCCTGGAGGATTGCTCTGGGGGGCTCCCTGTTGACTTGGCCCTCCAGGAGGGAAGCTGTGCTGCCTCCTCATCACCATCCCTCCGAATTCAGCCGGCCTCCTGTCTGTGGGTGCGCCCGACTGCATGTTGCTCTCATCGGGAGACTGCATCTGCAGAGGATTGCTGACATTATTTTCGAACGGATGATGTGCTCCAGGAGAATTCAAAGACTGCATGTCCATGCTTGTGACGCTTGGTCTAAAAATAATGTTGTGTCCATTTTCTGCCTGCTCCaaggcatgtgtgtttgtttctctACAGTGCTGCTGTGGCTCAGGAAACCATGAGTTTTCTTGAGGTAGGTGGGGGCTGTCAAAGTTTCCGTGAAAATTATGCTTCTTCTCAAAATTGGACTGAGACACACTGCCCAGAGGCCCTCGACAGACCATGCCATTTGAAGTGACATCTCCGTGGAGATTTAACTGCTGCAGATCAGGTTGCCTCATTCTCTGTTGTTGGCTCCTGGATGCCATTTGTTTGATCATCATTGCTGCATTCTGTcgccgctgctgctgctgctgctgctgctgctgctgtgggCCAGAGCTCAAGGGTAGGGGGCCGGATGGAAACCCATCCGTCACATGAGATGTAAAGTCCCCCATGGGAGAGGGGAATGCCGAGGGGGAGAGGTGGTTCTCAAGACTGGGCCGATTATGTAAGCTGTGGCTTAGGGGGCTGCAGCTTTCTCCAGCGGAGCCATTCGGGAGATCAAACCGTGGCCTTTTAGCCATGTTCAAATAGGGTAGTGAGCTGAGGTGATGTGGGGGCTGAGGGGCTAGTTGGGGGACATCGAACACCGGCTCCCCGAAAGGGTGCATGTTATGGTTGTTCAGTCTATGTATGGGCCGATCCAGGTGGCCGTGCTGAACGTGCACCATTGGGCCACCGCCTTGAACATCTGTATTGTTTGCTACAAAGTCTGGAGTGTGATAAAATCGAGGGAGGGCAGGGGAACCAGGGTTCTGCCTGACAACAGGTCCTGGTCTTTGCTGTGCCATGAGGTGGTGCCTCGTATTAACCCCCGGATCCATTTTGCCCCTATTTCCAAATCGGTCAGAAAACACATTTTGCTGAGGTAGCTGCTGGTCAACTTTTGAGCTGCCCATCATGGGCCCTCGGGAACCACTTCGATTACAAGTAGAAAAATTACCCCCGACTACTTGGTTCCCTGTTTCACAATAGGGCAGTTTGTGCTCGGAAGAGTCCGCGGTGGAGAATCCTGTCATGTCAAAATTCCCAGTCAGAGGATCACAGGGAAAACAGTGCTCTGATCCCCCCATTCTGCCCTGTGGGAAAAGCCTGTAGTGTTCAAGTCTATGGGTTTCAGGCGATGAAGATGGCAAGCCGTGGAACGAAGCAGCACGGTTTGGTGACTGGTCTAGAGGAAGACATGGTGCTGGAACAGCATGATTGCCGTTCGGATGGCCGTGCGGCTGAAACTCAGGCATCGCAGCCATTCTCTGTTGTTGCTGCTGCGAGATGCATTCTCGCGACTGGGGCTCTGCGAGCTGCTGACTGAATCCCCCCTCAAACATATGCGGGTGGCCCGCGTTGGTGCTGCTGAAACCCATGTGCCTGTCGCCGTGCAGGCAAGAGGGAACGCTGTCCTGGTACAGATGTGAATGCTGGTCGTGGTTAGGAGGTTGATGGTTGAATGGTCCTTGCATGTGGAGCTGATGTTGTGGCTGAACTCCCATACCGAGCATATCCCCGTGGCCATGAGTCTGGAACCCATACTGATCTCTATTCGAGACAAAGTTGAGTCCCTGCATAGGGGATTCATTTAGGGGACCCATCATTGGCTCCACAGCTACCGACGGCCCTTTCATATGGAATCCAGCACTGTTATAATTAGAGTTCATTTTCAGTGCACTGGGATTAAATTCCTTTTATTTGTTTCTCactgca

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005981 True 3202 lncRNA 0.52 2 4095871 4099183

Neighbor

gene id symbol gene type direction distance location
XLOC_002532 NA coding downstream 49554 4032478 ~ 4046317 (-)
XLOC_002533 NA coding downstream 55366 4038226 ~ 4040505 (-)
XLOC_002531 NA coding downstream 139022 3954090 ~ 3956849 (-)
XLOC_002530 FP236598.1 coding downstream 327105 3768651 ~ 3768766 (-)
XLOC_002529 CU571170.1 coding downstream 589217 3506540 ~ 3506654 (-)
XLOC_002535 grin3a coding upstream 180338 4279521 ~ 4316015 (-)
XLOC_002536 CABZ01073795.1 coding upstream 268247 4367430 ~ 4375190 (-)
XLOC_002537 NA coding upstream 409206 4508389 ~ 4577852 (-)
XLOC_002538 NA coding upstream 474371 4573554 ~ 4583020 (-)
XLOC_002539 NA coding upstream 713121 4812304 ~ 4818606 (-)
XLOC_002540 NA non-coding upstream 820140 4919323 ~ 4922051 (-)
XLOC_002546 NA non-coding upstream 1122732 5221915 ~ 5223942 (-)

Expression


Co-expression Network