G601560


Basic Information

Item Value
gene id G601560
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 36303451 ~ 36309526 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU685372
cgagaaccttctagagccacgtaactcaccacgcactatcgacctgaggtctagaacaggtttctaacgtttcagaactctaggtcggacggttcttttttagctcgaacaaagctaactattgcaggcactgtctgtctctacgaaccccaatacgtccctccttccaagttgtgtgtctgtgtgatttagttttccttagaaattttatgggaaaaatgactgatttacagttcatgggggttgcctaatcacacatatgaagttttggaaagatgtgacttttttaaccctttgaaacagcacctgtgacaccaattatggtactttcggttggcacaggaagctataagtcaacacatatcctcattggggtatgcttttacagaatcctgagttttaagtccttacgttaagaactgactgatttacacagggttgaatgcactatgtctatcaaactgcaggcattgtatggatatacacttttagggtgattttaaccacttccggttggtccaggaagcttagaatcgacacaggtagacctcatagtggcctgatggactgtcatcgatgacaggttcatacggcattcataacccacataggcttcaggttgaatttcggggtgcaggcaatgtattcctatggggagaggggtcattgtaatctgtgagatcaaaaaaccctgttttactgttaagggttaatgccacacggtcaaggttaggcttgcacggatcgggaggaccttaggaacgtacctgaggtcgaattgtgcttctcaccctaacggttctctcactgtcacccaaaagcaaatgacgttgtggggcaggcttcattttgggcctacttttctaatggtcgctgcgcttagaccgagcgagctacggtcaagcgggatatctcgatgaactctgcacggcctagggattatggtaatgccattgcctgctctctgtgtctttaagcaccgcacttttttcactccatccttgctgtgtgtgtgtgagagagcttttctttgacatctgttgggagaaatgactgatttacagttcaggagggttacctagtcacacatatgaagttttggagagatgtaacttttttaaccctacaaaacagacagtgtgacccaattaaaggcacttccggtgggcacaggaagctataagtaaacacatgtcttgactgaggtagcctcttacagaatcctgagttttaagtatttaagttaagaattgactgatctacacagggttgaatgcagtgattttcataatgacattttatgtgtttcaaaacacttttagggtgaatttaaccacttccggttggtccaggaagcttagaatcgacacaggtagac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU685372 True 1378 lncRNA 0.44 2 36303451 36309526

Neighbor

gene id symbol gene type direction distance location
LOC118965353 NA coding downstream 690646 35612389 ~ 35612805 (-)
LOC118965352 NA coding downstream 1103353 35099407 ~ 35200098 (-)
abraa LOC106582659 coding downstream 2345126 33951832 ~ 33958325 (-)
ywhaba LOC100136192 coding downstream 2467593 33817223 ~ 33835858 (-)
LOC110527679 LOC106565035 coding downstream 2528543 33770050 ~ 33774908 (-)
LOC110527685 LOC106582661 coding upstream 228612 36538138 ~ 36559214 (-)
LOC110528947 LOC106582664 coding upstream 429165 36738691 ~ 36858144 (-)
LOC110527694 LOC106582668 coding upstream 721748 37031274 ~ 37038809 (-)
gli1 LOC106566129 coding upstream 778222 37087748 ~ 37208952 (-)
LOC110527696 LOC106582672 coding upstream 930039 37239565 ~ 37248455 (-)
G601537 NA non-coding downstream 60116 36233955 ~ 36243335 (-)
G601527 NA non-coding downstream 87042 36216204 ~ 36216409 (-)
G601522 NA non-coding downstream 89663 36213550 ~ 36213788 (-)
G601516 NA non-coding downstream 108488 36194346 ~ 36194963 (-)
G601515 NA non-coding downstream 114093 36188324 ~ 36189358 (-)
G601565 NA non-coding upstream 1878 36311404 ~ 36311675 (-)
G601566 NA non-coding upstream 2486 36312012 ~ 36312465 (-)
G601760 NA non-coding upstream 192871 36502397 ~ 36502625 (-)
G601765 NA non-coding upstream 201671 36511197 ~ 36511770 (-)
G601782 NA non-coding upstream 226245 36535771 ~ 36536045 (-)
G601245 NA other downstream 542181 35760699 ~ 35761270 (-)
G600881 NA other downstream 1248223 35001880 ~ 35055228 (-)
G600872 NA other downstream 1336665 34965447 ~ 34966786 (-)
G600721 NA other downstream 1688576 34614492 ~ 34614875 (-)
G604485 NA other upstream 2279629 38589155 ~ 38597519 (-)
G604484 NA other upstream 2279891 38584293 ~ 38639400 (-)
LOC110527723 LOC106582696 other upstream 2753479 39063005 ~ 39123578 (-)
G606135 NA other upstream 3529365 39838891 ~ 39841331 (-)
LOC110527741 LOC106582711 other upstream 3914029 40135298 ~ 40275270 (-)

Expression


Co-expression Network