XLOC_025342


Basic Information

Item Value
gene id XLOC_025342
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 24930580 ~ 24936255 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052669
CTCCAGTACCTGACAACACACCACAAAAACCGGACAGCACAAATTAAAAAAACCTCCGGATAGTTCATCCAGCATTAGCGACTCACTAAAAAGAACCGGTTCTTATGAGTCATTTGTTCACGAATCTGTTCGCTTCACATCCTGTTGGCTTTATTTTGTGCGGGCAAAGCTGCTTTTGTTGTGAAAATTTCACCAACACAGTTTCACGAGCGTGTGTTGCTTTTCATTGCCCTGGCCGTCCACAACATTGGTTGTTTATTGTGAGGAAGAAGTGCTGCAGACGGCGATAAGGCACTCCAAGATCAGTTTATAGCCAACACTTTTCCCGCCAGCCCTGTAAAGGTCTTAAGAGGCGCAGCAGCTGTTCACCACAACACCGCTCTCAAGGTGAACGAAGACGTCATCAAGGTGAGCAGATGCCTAGCATTAGTGAGGTTGCAACTTGTGCATAAATGTCTAAAAGGTGGCAGGTGGCCAAACAGGCCAGAAGGTCTTTTCCGTCACTGTGGGCGATAAGTGACCTTGCCAGTGGTATCCCAGCAAGAGATTCAGACTAGACATTAAACTTGCTTTGGATTATGTCAGAAATATAAAACCTCACTAAGCCTCTGCTTACTTGTTTTGTGTCTAGTTGCATCTGTGGACCGCAGTGATGATGCGTGACTCCAACATTTAGCTTAaatattttatctgttttataaCATTAGTGTGAAAGCATACCCTATGGATaaattaatatgaatattaaaataagtacacTTAAAGAAAGGCAAATAATTTGTTCCTAGCCTCTGTTCACACCTGGCAGGTTTGATTCAATCAAAACAAACTTTGGTGCAGTTGCTTTGTTAGTGAAGCTCATTCAGTTTTGAACACTTTGATCTGAACTGCAGGACAAACAGGCATTTCTGACTTTGTGTGTCTTTTTCAAACCTTTACCTTCTCCTAAACCAGATAACATGGTCAAAAATGACCCTCTGTTTTGGTCTCACCCATCAACCAAATGTAGCTTCCTTTCCTTCAAGCAGGGACCTTGGGAAGTTTGATCTGAATTATGGAGTGGATTTTAGTCCACTTGCTCTTAGAGCATTTCCCTAGAAAAAAACAATTGGTCagaacaacaaatgtttttgaaaatcagggttaattcgccaaatattgcatttttattttttttttatttggtttgatttatttatttagaacagaaaaatcatatataaaattctttagcaaaaaatacatttaaacatggTTGAAATGGAgcaggatgaagcacaagcttgtTATTTTTCCACCCCATTACCATACACATCATATATGTTACTTAAACTTACTACTTTTACTTATCTCTTTTtcttttacatgagacatatgagctttacatgagacatattttttttattttggcatctttgacattatatgtttgattccattttaTAACATAGACCCAAAAAAATACAGACTACTGCAAACAGCCATTAATTGAAATTTCATCGTACCTTtctcattttattctttttcaatcacctcttttcatcattatttttctttaataatatatatttatacaatttttaaaatggattaatatcctgacattgtttgagaatctGTTCTAGACTGTTACAAAtttcacaccacacacacaattttttttaagttgtccttgttttcaacctttaagattttgttcttctctcagattatatcccccTTGCCTTTCTTCCGAAAAGCGTACAAaagtttttttaagtattttattcctagctttaaacataaattgagctgttttaattTTAACCAAATCATTAAACCTAAgtatcttcaatttaaaaaacAAGGGATTTGTATGTTCCAAATAATTCACATTTTCTGTCTTGTACATAAGAATTTTAAGTTAGATTTATATGTATTCCCCCATATTTCACCACAATAACTCATATATGGCAACATAAGTGTGTTATACAATACATACATTAATTTATTGTCCAGGATAAATCTTGTATTATGCACTATTGCTACAGATTTCACAAATTTtgatatcacattatttatttgcggTTTCCAGCTAATTTTATGATCCAATACAACACCAAGAAACTTACAGTAATTGCAAATGCTCTTTCTATTactttgttatacatttttttttatctatattatGAC
>TCONS_00052670
GTTCATCCAGCATTAGCGACTCACTAAAAAGAACCGGTTCTTATGAGTCATTTGTTCACGAATCTGTTCGCTTCACATCCTGTTGGCTTTATTTTGTGCGGGCAAAGCTGCTTTTGTTGTGAAAATTTCACCAACACAGTTTCACGAGGTAATATATTAAGAGAGCGCATATTTACTCACACAAAGTTGTCCTGAATGTTATTATTGTCGACTGAAGTTAGATTATTGtcaaaaattgttgtttttgtgaTTGTGTTTATAACAACCTACTCCGTATTTGATAGCGTGTGTTGCTTTTCATTGCCCTGGCCGTCCACAACATTGGTTGTTTATTGTGAGGAAGAAGTGCTGCAGACGGCGATAAGGCACTCCAAGATCAGTTTATAGCCAACACTTTTCCCGCCAGCCCTGTAAAGGTCTTAAGAGGCGCAGCAGCTGTTCACCACAACACCGCTCTCAAGGTGAACGAAGACGTCATCAAGGTGATGACCTCAACGTGTATGAAGGAAGTCTTACACATTCCCCTTCTGTCCTTTCCTGTACCTGTTGTTTTCTGACATGCTGCTGGCAGAGTTTATGAGCCATGGCGGTGCATACAAAACCTCTTTCCACATTATCA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052669 False 2172 lncRNA 0.34 2 24930580 24932887
TCONS_00052670 True 619 lncRNA 0.43 2 24930642 24936255

Neighbor

gene id symbol gene type direction distance location
XLOC_025341 mrtfaa coding upstream 165453 24708685 ~ 24765127 (+)
XLOC_025340 slc25a17 coding upstream 238217 24681855 ~ 24692363 (+)
XLOC_025339 zmp:0000000912 coding upstream 270252 24655643 ~ 24660328 (+)
XLOC_025338 zgc:113411 coding upstream 280686 24640946 ~ 24649894 (+)
XLOC_025337 si:dkey-68o6.8 coding upstream 291659 24634481 ~ 24638921 (+)
XLOC_025343 cbx7a coding downstream 49890 24986145 ~ 24994617 (+)
XLOC_025344 CR936416.1 coding downstream 119721 25055976 ~ 25060120 (+)
XLOC_025345 st13 coding downstream 151350 25087605 ~ 25100726 (+)
XLOC_025346 napsa coding downstream 184901 25121156 ~ 25133244 (+)
XLOC_025347 si:ch211-256m1.8 coding downstream 217823 25154078 ~ 25165189 (+)
XLOC_025429 BX649540.1 misc downstream 5312484 30248739 ~ 30249036 (+)
XLOC_025327 NA non-coding upstream 478567 24438597 ~ 24452013 (+)
XLOC_025323 NA non-coding upstream 713069 24217188 ~ 24217511 (+)
XLOC_025319 CR790362.1 non-coding upstream 746154 24161869 ~ 24184426 (+)
XLOC_025317 NA non-coding upstream 797095 24121201 ~ 24133485 (+)
XLOC_025316 dre-mir-152 non-coding upstream 834544 24095957 ~ 24096036 (+)
XLOC_025351 NA non-coding downstream 372455 25308710 ~ 25308964 (+)
XLOC_025353 NA non-coding downstream 636523 25572778 ~ 25573533 (+)
XLOC_025354 NA non-coding downstream 667413 25603668 ~ 25624618 (+)
XLOC_025355 NA non-coding downstream 708976 25645231 ~ 25648375 (+)

Expression


Co-expression Network