G602055


Basic Information

Item Value
gene id G602055
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 36731597 ~ 36735768 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU685908
GTGAATTGGGGGCAGATTTGAGACCTGCTGGAAAAGTACCGCAACAACCTTacttacttactgactttattgtccccatggggaaatgttgttgcagtgtcatgtacacatttaaaATGGCGTGTAAATACATAACAAAATTggcaatacaactttcataacagtgacataccaatacatacattttttttaaagactagcctgctggccttactgagttgATAGGAACACTAGCCCAAggtatttaggagggatatcacacctggaaCAAATTATTGTCTAGTAAGAGAGAGCggtagggagaccagagagagggttAAAACGGCAGGATTTAGATATTCTGACCACAACCACCAAAATGGTGGTTAAACCatcagaggaggggagatgagtgaCAAAATCAATGGACAGATGAGACCAAGGACATTGAGGCATGGGAAGGAGTTTCCCTGCTGGAGCGTGCTGGGGTGATTTAGTTTGTGCACATACGGAAGAGGAATTTAGGAGTTGTAGCGAGTGATGTCCTGTGCAAAGGTAGACCACCAGTACTTTGAATAGTTTGGTTCATACTTGGATGTCCAGCGATGACAGCTGTGTTCGCCCAGGGCAGCAGCCGATCCCTCATCCCTGTGGAAACGTAGATGCGCTCAGGAGGACAGGTAGCTGGTGCGTGTTGCTTCCCCAGGGCCTGGCGAATGACCACATTTACGTAATTGATCCTGGGCGATATGTCAGAGTGAAATCGATcgaatgctcttactgagggaaggaggttgttggccaagatctcacaatacatggccccatccatcctcccctcaatacggtgcagtcgtcctgtcccctttgcagaaaagcatccccaaagaatgatgtttccacctccatgcctcacggttgggatggtgttcttggggttgtactcttccttcttcttcctccaaacacggcgagtggagtttagaccaaaaagctctatttttgtctcatcagaccacatgaccttctcccattcctcctctggatcatccagatggtcattggcaaacttcagacgggcctggacatgtgctggcttgagcagggggaccttgcgtgcgctgcaggattttaatccatgacggcatagtgtgttactaatggttttctttgagactgtggtcccagctctcttcaggtcattgactaggtcctgccgtgtagttctgggctgatccctcaccttcctcatgatcattgatgccccacgaggtgagatcttgcatggagccacagaccgagggtgattgaccgtcatcttgaacttcttccattttctaataattgcgccaacagttgttgccttctcaccatgctgcttgcctattgtcctgtagcccatcccagccttgtgcaggtctacaattgtatccctgatgtccttacacagctctctggtcttggccattgtggagaggttggagtctgtttgatttagtgtgtggacaggtgtcttttatacaggtaacgagttcaaacaggtgcagttaatacaggtaatgagtggagaacaggagggcttcttaaagaaaaactaacagttgaagtgtacctttgataaacattacagacctctctctctctcctccccttcacctacactaatttgtaagtaggaaaacctgcaaaatcggcagtggatcaaatacttgttctccccactgtaatgtaatgacacattatataaactctttatagtgttttatttacattttagagggatAAGGTGATatgttggacagatcgagtgaaaaaaaggcGTTTTCTCACacatctcctcttcttctctctaccacgcattagtttcgcttccccacctgccatttttaaaaagacccgaagGAGCTCATTGCCGTCTTCAatcatgcagaaacgggcagcgtggaGGTCTCGGCATGAAttcagttggaaaggggagaaatggtgctttacaatggtattgacattacagttgatctggaagtattacgtttttttgggcgctaaaataaggtcaattgtacggaccaaggcgatgtacaaaagtgagtgagtttactTTAACACAATTTAACTGATTAACTCTGGAGGCCCCAATTCAAAATCATCTCTTTGTAGAAAAGTAACTGTTTACATTCATTCCAAAAGCGAACACATTAACACAGTTTCAAATAGATTCAAATCCTTTTTAGGCCTGTGCATTAATAACACAAGCTAAAAATAGCTAGCTAGTATGAAATGGAAGGCTACCTATCACCTatcactagctagctagcggTTAGAAATTAGCATGTGACTTGGCATTGGTTACTTTTTATAAAATGTGTATCTTTCTAAAATACGTATCATTAGAGTAGTTGATGTGTACACATGTAATGTGTACACACTCAATATGATTCCCTCTTTAGAAAAAACATTTAAGAGCCAAAACATTTATAACGGAAATAAACAAATTCAGCCGAAATGGCATCTTGTTCTCATTGACTTTCATAAAAAAGGGAGCTACCTATGTAGCTCATGTCAATGGGAAAATCTCACTTGTTTTTCACTCAGTCAAAACAGTTCAATTAGACATCAAAATGACAGGAAAACATGTTTAACTAAACTGTGTTGAGTTCTCTAGATTTTGATGAAGTAACTATGCGTACAAACCAGAGACACGGAGAGATAGCTTTTGGTTTTTTTCACTCGGCATCTTCCAATGGTCACAGACCAACGTACGAAAAAGAGAGGCGCGCACCTGCAGCAGTAACACTCTGAATGCCTCTGCCTAGTGGTAGCGCTAAGTATACACGTATATCAATGCAACACCATGGAGGACTACAATAATAATGGTGTAGCTCAGAAATAATAAGTAATCATTTGTGGAAAACATTGCTACTGCAATATAACCCCACCTTTTTCATATGTGAGTTGAATAAGTGGTTaggagcgttgggctagtaatcAAAAGGTCTCTAGTTCAAATCCCGAGCCgactaagtgaaaaatctgtcgatgtcccttgagcaagacacttaaccctaactgCTCCTGCAAGTCGgtctggataaaagcatctgctaaatgacaaaaatgataAAAACACTTTCACTTGCAATTCCACTTGTGAAAGTGAGATTTACATATGGGGTTTtcttacatgtgaaactgcaaaagAGATTCACACGTTAATGTTTTTCAAATGTAAACTTACAATTCACATGAGttgaaaacatgttattttacTCACATGAAAAGGTGAtgttaacatgtgaactctacATTTAATTCATGTGAACATATGGTTTCACGTGTGAAATTTAAGgtcaacatgtgaaaacagccaTTTCACATGTAAAACTGCAAATGTCACATGTTTTTTGTGTGTAATGGAACAGCTCCTTTAAAATCAATAATGCATTGTGTTCTTTAGGTAAACAACTTGTTTGAATAATATTTGAAAGCAGCCTTTCCTTATTAAATAAACACTAGTACTTAAGAGTTTGAACTCTAGGTGTAAAAGGTTGATGTATTGATGTAAAACTGTTTACAACAGAGTGTAAGAAGTGTACAGTATCCTAAGGGAACCCTAGTATAACTCAATACAGACCACCTAGGAACAGATAGTGGGTTGGATCTCTGCACTGTAGGTTTTGATGTGGAAATTGTAAGGTTTGGGGATGGTGATTATGATGATGAAACTTAGTGTCTGTTTGTCTCTTGTCTGATTTGTAAATCAATATGAAAAATGTTCTGGTCATATCTCTGatactgtagcacctacagagcattatgggtactgtagtacatcGTGCTACAGGCATCACAAGCATAAAATAATgactaatacagtatatactaaaAAAATAATACTAAAAAACAATGTACCAACGTACAGTCGAGTGGAACCacctttgtttgtttgtatgtttatttgtttgtttgattATAGTGTTTGGGATAGTGCATGCACTACATGCCTCTGTAGCTGCTGAAAAAAAATGTTATGACAATAACGATGAAACTCTTTCAATAAA

Function

NR:

description
Transposable element Tcb1 transposase

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU685908 True 4037 lncRNA 0.41 2 36731597 36735768

Neighbor

gene id symbol gene type direction distance location
LOC110527685 LOC106582661 coding downstream 172383 36538138 ~ 36559214 (-)
LOC118965353 NA coding downstream 1118792 35612389 ~ 35612805 (-)
LOC118965352 NA coding downstream 1531499 35099407 ~ 35200098 (-)
abraa LOC106582659 coding downstream 2773272 33951832 ~ 33958325 (-)
ywhaba LOC100136192 coding downstream 2895739 33817223 ~ 33835858 (-)
LOC110528947 LOC106582664 coding upstream 2923 36738691 ~ 36858144 (-)
LOC110527694 LOC106582668 coding upstream 295506 37031274 ~ 37038809 (-)
gli1 LOC106566129 coding upstream 351980 37087748 ~ 37208952 (-)
LOC110527696 LOC106582672 coding upstream 503797 37239565 ~ 37248455 (-)
LOC110527700 NA coding upstream 974411 37710179 ~ 37714146 (-)
G602018 NA non-coding downstream 60727 36670628 ~ 36670870 (-)
G601839 NA non-coding downstream 111157 36620115 ~ 36620440 (-)
G601825 NA non-coding downstream 118577 36612773 ~ 36613020 (-)
G601818 NA non-coding downstream 124006 36607376 ~ 36607591 (-)
G601816 NA non-coding downstream 124814 36606449 ~ 36606783 (-)
G602138 NA non-coding upstream 125229 36860997 ~ 36861227 (-)
G602142 NA non-coding upstream 128350 36864118 ~ 36864348 (-)
G602723 NA non-coding upstream 133053 36868821 ~ 36881944 (-)
G602809 NA non-coding upstream 259283 36995051 ~ 36996002 (-)
G602813 NA non-coding upstream 268411 37004179 ~ 37009481 (-)
G601245 NA other downstream 970327 35760699 ~ 35761270 (-)
G600881 NA other downstream 1676369 35001880 ~ 35055228 (-)
G600872 NA other downstream 1764811 34965447 ~ 34966786 (-)
G600721 NA other downstream 2116722 34614492 ~ 34614875 (-)
LOC110527679 LOC106565035 other downstream 2956983 33770050 ~ 33774908 (-)
G604485 NA other upstream 1853387 38589155 ~ 38597519 (-)
G604484 NA other upstream 1853649 38584293 ~ 38639400 (-)
LOC110527723 LOC106582696 other upstream 2327237 39063005 ~ 39123578 (-)
G606135 NA other upstream 3103123 39838891 ~ 39841331 (-)
LOC110527741 LOC106582711 other upstream 3487787 40135298 ~ 40275270 (-)

Expression


Co-expression Network