Gene
RNA
| Item | Value |
|---|---|
| gene id | G602295 |
| gene name | gli1 |
| gene type | unknown |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048571.1 |
| NCBI id | CM023225.2 |
| chromosome length | 90918291 |
| location | 37089624 ~ 37090756 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| gli1 | Enables DNA-binding transcription factor activity, RNA polymerase II-specific. Involved in positive regulation of transcription by RNA polymerase II. Acts upstream of or within several processes, including muscle cell fate specification; nervous system development; and positive regulation of smoothened signaling pathway. Located in chromatin. Part of Hedgehog signaling complex. Is expressed in several structures, including central nervous system; head; neural plate; neural tube; and paraxial mesoderm. Orthologous to human GLI1 (GLI family zinc finger 1). |
| description |
|---|
| zinc finger protein GLI1-like isoform X2 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU686155 | True | 1133 | TUCP | 0.60 | 1 | 37089624 | 37090756 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| arhgap9 | LOC106582667 | coding | upstream | 75570 | 36955176 ~ 37014054 (+) |
| LOC110527691 | LOC106582666 | coding | upstream | 176612 | 36907551 ~ 36913012 (+) |
| LOC110527690 | LOC106582665 | coding | upstream | 192861 | 36868740 ~ 36896763 (+) |
| LOC110527688 | LOC106582663 | coding | upstream | 410119 | 36668801 ~ 36679505 (+) |
| LOC110527686 | LOC106582662 | coding | upstream | 506646 | 36573811 ~ 36582978 (+) |
| LOC110527697 | r3hdm2 | coding | downstream | 173637 | 37264393 ~ 37342630 (+) |
| LOC110527699 | LOC106582673 | coding | downstream | 378254 | 37469010 ~ 37575510 (+) |
| LOC118965405 | NA | coding | downstream | 444308 | 37535064 ~ 37535117 (+) |
| LOC110527703 | LOC106582676 | coding | downstream | 872132 | 37950666 ~ 38002305 (+) |
| LOC110527704 | LOC106582678 | coding | downstream | 945240 | 38035996 ~ 38040937 (+) |
| G602294 | NA | non-coding | upstream | 3865 | 37085286 ~ 37085759 (+) |
| G602293 | NA | non-coding | upstream | 5051 | 37082947 ~ 37084573 (+) |
| G602137 | NA | non-coding | upstream | 228292 | 36861091 ~ 36861332 (+) |
| G602133 | NA | non-coding | upstream | 231003 | 36858394 ~ 36858621 (+) |
| G601681 | NA | non-coding | upstream | 504545 | 36584866 ~ 36585079 (+) |
| G602296 | NA | non-coding | downstream | 78 | 37090834 ~ 37091070 (+) |
| G602297 | gli1 | non-coding | downstream | 558 | 37091314 ~ 37091733 (+) |
| G602303 | NA | non-coding | downstream | 7387 | 37098143 ~ 37098371 (+) |
| G602306 | NA | non-coding | downstream | 12923 | 37103679 ~ 37104137 (+) |
| G602312 | NA | non-coding | downstream | 21849 | 37112605 ~ 37112810 (+) |
| G600531 | NA | other | upstream | 2118219 | 34971128 ~ 34971405 (+) |
| G600431 | NA | other | upstream | 2329966 | 34759347 ~ 34759658 (+) |
| G600013 | NA | other | upstream | 3122869 | 33966289 ~ 33966755 (+) |
| G599123 | NA | other | upstream | 3794096 | 33290526 ~ 33295528 (+) |
| G604207 | NA | other | downstream | 1408275 | 38499031 ~ 38499662 (+) |
| G604258 | NA | other | downstream | 1493718 | 38584474 ~ 38594822 (+) |
| G606400 | LOC105027254 | other | downstream | 3035778 | 40126534 ~ 40141972 (+) |
| G606452 | LOC106582711 | other | downstream | 3115813 | 40206569 ~ 40206897 (+) |
| G606464 | LOC106582711 | other | downstream | 3132419 | 40223027 ~ 40224171 (+) |
