G602297 (gli1)


Basic Information

Item Value
gene id G602297
gene name gli1
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 37091314 ~ 37091733 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU686157
gaATAAGATATTCAAAAGAATACAAAACTAGCCATATTGAGAGTTGCAAAAttccaaaattcccaggttttccagaattcAGAAAAGCTGGACATTTTGagaaagttaccagaattttgcaacccaagCCAGACTAATTAAAAACCAAACTAACAAGATAAGTCTGCACCTGGTACTCGCTGAGGAGCACTCCTCGTCTCCCGGGTGTCCCTGCTCCCTGTTCCATACTGGACAGCGGGGTAGGGGGTGGGCCGCCAGTTGCTGCTGCATACTTAGCCTTCAGGCTGTATTGCTGAGCGGGTGTTAGACATGGCAGACCTGGcaaccctcctccccctccaacaCCATGGCAGAGCCCTCTTCGGCGGCTGGTCTCAGGGGAGAGGGGGTCACCTCCTCCCTGGTCAGGACCCAGGAACC

Function

symbol description
gli1 Enables DNA-binding transcription factor activity, RNA polymerase II-specific. Involved in positive regulation of transcription by RNA polymerase II. Acts upstream of or within several processes, including muscle cell fate specification; nervous system development; and positive regulation of smoothened signaling pathway. Located in chromatin. Part of Hedgehog signaling complex. Is expressed in several structures, including central nervous system; head; neural plate; neural tube; and paraxial mesoderm. Orthologous to human GLI1 (GLI family zinc finger 1).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU686157 True 420 lncRNA 0.52 1 37091314 37091733

Neighbor

gene id symbol gene type direction distance location
arhgap9 LOC106582667 coding upstream 77260 36955176 ~ 37014054 (+)
LOC110527691 LOC106582666 coding upstream 178302 36907551 ~ 36913012 (+)
LOC110527690 LOC106582665 coding upstream 194551 36868740 ~ 36896763 (+)
LOC110527688 LOC106582663 coding upstream 411809 36668801 ~ 36679505 (+)
LOC110527686 LOC106582662 coding upstream 508336 36573811 ~ 36582978 (+)
LOC110527697 r3hdm2 coding downstream 172660 37264393 ~ 37342630 (+)
LOC110527699 LOC106582673 coding downstream 377277 37469010 ~ 37575510 (+)
LOC118965405 NA coding downstream 443331 37535064 ~ 37535117 (+)
LOC110527703 LOC106582676 coding downstream 871155 37950666 ~ 38002305 (+)
LOC110527704 LOC106582678 coding downstream 944263 38035996 ~ 38040937 (+)
G602296 NA non-coding upstream 244 37090834 ~ 37091070 (+)
G602294 NA non-coding upstream 5555 37085286 ~ 37085759 (+)
G602293 NA non-coding upstream 6741 37082947 ~ 37084573 (+)
G602137 NA non-coding upstream 229982 36861091 ~ 36861332 (+)
G602133 NA non-coding upstream 232693 36858394 ~ 36858621 (+)
G602303 NA non-coding downstream 6410 37098143 ~ 37098371 (+)
G602306 NA non-coding downstream 11946 37103679 ~ 37104137 (+)
G602312 NA non-coding downstream 20872 37112605 ~ 37112810 (+)
G602313 NA non-coding downstream 21713 37113446 ~ 37113748 (+)
G602324 NA non-coding downstream 40822 37132555 ~ 37132778 (+)
G602295 gli1 other upstream 558 37089624 ~ 37090756 (+)
G600531 NA other upstream 2119909 34971128 ~ 34971405 (+)
G600431 NA other upstream 2331656 34759347 ~ 34759658 (+)
G600013 NA other upstream 3124559 33966289 ~ 33966755 (+)
G604207 NA other downstream 1407298 38499031 ~ 38499662 (+)
G604258 NA other downstream 1492741 38584474 ~ 38594822 (+)
G606400 LOC105027254 other downstream 3034801 40126534 ~ 40141972 (+)
G606452 LOC106582711 other downstream 3114836 40206569 ~ 40206897 (+)
G606464 LOC106582711 other downstream 3131442 40223027 ~ 40224171 (+)

Expression


Co-expression Network