G605414 (LOC100846954)


Basic Information

Item Value
gene id G605414
gene name LOC100846954
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 38888209 ~ 38891559 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU689484
acagaataacaacaaaaaaatccagaaaaacacatgtcaaatgttataaattgatttgcattttaatgagggaatttgacccctctgcaaaacatgacttagtacttggtggcaaaactcTTGTTGGCAGTCatagaggtcagacgtttcttgtagttggccacatCTCAGGAtagattttgtcccactcctctttgcagatcttctccaagtcattaaggtgtcaaggctgacgtttggcaactcgaaccttcagctccctccacagattttctatggggttaaggtctggagactggctaggccactccaggaccttaatgtgcttcttcttgagccactcctttgttgccttggccgtgtgttttgggtcattgtcatgctggaatacccatacacgacccattttcaaagccctggctgagggaaggaggttctcacccaagatttgacggcacatggccccatccatcgtctctttgatgcggtgaagctgtcctgtccccttagcagaaaaacacccccaaagcataatgtttccacctccatgtttgacggtggggattgtgttcttggggtcataggcagcattcctcctcctccaaacacggcgagttgagttgatgccgaAGAGCTccatttgtctcatctgaccacaacactttcacccagttatcctctgaatcattcagatgttcattggcaaacttcagacgggcatgtatacgtgctttcttgagcaggaggaccttgcgggcgctgcaggatttcagtccttcacggcatagtgtgttaccaattgttttcttggtgactatggtcccagctgccttgagatcattgacaagatcctcccatgTAGTtttgggctgattcctcaccgttctcatgatcattgcaactccacgaggtgagatcttgcatggagccccaggccgagggagattgacagttattttgtgtttcttccattgcgaataatcgcaccaactgttgtcaccttctcaccaagctgcttggcgatggtcttgtagcccattccagccttgtgtaggtctacaatcttgtccctgacatccttggagagctctttggtcttggccatggtggagagtttggaatctgattgattaattgcttctgtggacaggtgtcttttatacaggtaacaaactgagattaggagtactccctttaagagtgtgctcctaatctcagctcgttacctgtattaaagacacctgggagccagaaatatttctgattgagagggggtcaaatacttatttccctcattaaaatacaAATCAATTTCTAAAaattttgacatgcgtttttctggatttttttgttgttattctgtctctcactgttcaaataaacctaccattaaaattatagaccgatcctttctttgtcagtgggcaaacatacaaaatcagcaggggatcaaataccttTCGCCCtcactgtatgtatttatttatttaatggcacatgagacacctgtctgatttgcACCTGTCtaagtggactaatccattgcgtaGGCTACGTGgatggcacaccagtatcaccagAAGTACATTTAGCCTACCGTTAATTCACAATTTctcatctacaatgtttgtttggttatggtcatttctgttaatgcattcaatatattattattaagaGTATATTACTGTTCTCATTGTCGGAGTGGACATGTTGTTAGGGGAGCGCACAAgctatgctacacttgtgagaaacaagttttggtttatttcattccatttacgagTTTTGTCAATTTTCTTCATTGTCTTTTTGTTTGAAGCGCTCATGTCAGTGTTGCGTATGGATGCGCACCTGATtacgcatagaagtaggcc

Function

NR:

description
transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU689484 True 1877 lncRNA 0.44 2 38888209 38891559

Neighbor

gene id symbol gene type direction distance location
LOC110527720 LOC106582692 coding downstream 21650 38863019 ~ 38866559 (-)
LOC110527719 LOC106582691 coding downstream 25335 38831707 ~ 38862874 (-)
LOC110527718 LOC106582690 coding downstream 95152 38770498 ~ 38793057 (-)
LOC110527716 LOC106582688 coding downstream 130724 38703237 ~ 38757485 (-)
LOC110527715 LOC106582687 coding downstream 228818 38531932 ~ 38659391 (-)
LOC110527721 LOC106582693 coding upstream 255 38891814 ~ 38916821 (-)
LOC110527722 LOC106582694 coding upstream 42242 38933801 ~ 39055212 (-)
LOC110527723 LOC106582696 coding upstream 172655 39063005 ~ 39123578 (-)
LOC110527724 LOC106582698 coding upstream 239882 39131441 ~ 39163634 (-)
LOC110527726 LOC106566095 coding upstream 288145 39179704 ~ 39181249 (-)
G604708 NA non-coding downstream 81497 38806497 ~ 38806712 (-)
G604706 NA non-coding downstream 81766 38806224 ~ 38806443 (-)
G604684 NA non-coding downstream 98589 38789413 ~ 38789620 (-)
G604678 NA non-coding downstream 105329 38782622 ~ 38782880 (-)
G605454 NA non-coding upstream 31665 38923224 ~ 38923464 (-)
G605460 NA non-coding upstream 37863 38929422 ~ 38929710 (-)
G605461 NA non-coding upstream 39188 38930747 ~ 38931016 (-)
G604484 NA other downstream 248809 38584293 ~ 38639400 (-)
G604485 NA other downstream 290690 38589155 ~ 38597519 (-)
G601245 NA other downstream 3126939 35760699 ~ 35761270 (-)
G600881 NA other downstream 3832981 35001880 ~ 35055228 (-)
G600872 NA other downstream 3921423 34965447 ~ 34966786 (-)
G606135 NA other upstream 947332 39838891 ~ 39841331 (-)
LOC110527741 LOC106582711 other upstream 1331996 40135298 ~ 40275270 (-)
G606973 NA other upstream 1737690 40629249 ~ 40629880 (-)
LOC110527764 LOC106582736 other upstream 2265111 41156665 ~ 41348915 (-)

Expression


Co-expression Network