G604789 (arhgef3)


Basic Information

Item Value
gene id G604789
gene name arhgef3
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 38939767 ~ 38940088 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU688815
gggggtGTCAGTGTGTTTGCGGATATGTGggtctctcaatctctccctctctactcactGCCTCATCCAGGTACTGTCGGTCTGGATGGTCGTTCGGCGTGTGTTTGAGGATCTCCCTGAGCAGCAGGGGGTATTTGACCAGCCGGCTCCTGGGTATATCCAGGAAGTTCCACAGGTCCAGCTTCCTGCTGAAGGGCGACTCCAGGCAGCGCTGCAGGAAGTCGTGCACCCGGTGGTCCTGCTTCTTATGGTCCAGCAGAGCCTTGGCTGCCACCTGATTACTGCAGTATGAGTTGTAGGAGTCTAGACAGGgaagctggag

Function

symbol description
arhgef3 Predicted to enable guanyl-nucleotide exchange factor activity. Acts upstream of or within myeloid cell development. Predicted to be located in cytoplasm. Orthologous to human ARHGEF3 (Rho guanine nucleotide exchange factor 3).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU688815 True 322 lncRNA 0.57 1 38939767 38940088

Neighbor

gene id symbol gene type direction distance location
lhfpl5a LOC106582689 coding upstream 235723 38690340 ~ 38704044 (+)
LOC110527711 LOC106582683 coding upstream 672421 38260379 ~ 38267346 (+)
LOC110527709 cdd coding upstream 769513 38162615 ~ 38170254 (+)
LOC110527708 LOC106582612 coding upstream 778869 38128380 ~ 38160898 (+)
LOC110527704 LOC106582678 coding upstream 898830 38035996 ~ 38040937 (+)
LOC110527727 LOC106582699 coding downstream 250993 39191081 ~ 39201578 (+)
LOC110527729 LOC106582701 coding downstream 288613 39228701 ~ 39240208 (+)
LOC110527730 LOC106582703 coding downstream 351568 39291656 ~ 39310234 (+)
LOC110527735 LOC106582706 coding downstream 430642 39370730 ~ 39376856 (+)
LOC110527736 LOC106582707 coding downstream 493101 39433189 ~ 39773724 (+)
G604788 NA non-coding upstream 26 38939483 ~ 38939741 (+)
G604786 LOC106582694 non-coding upstream 5385 38931875 ~ 38934382 (+)
G604774 LOC106582693 non-coding upstream 37394 38900722 ~ 38902373 (+)
G604710 NA non-coding upstream 131525 38808017 ~ 38808242 (+)
G604709 NA non-coding upstream 132108 38807395 ~ 38807659 (+)
G604790 NA non-coding downstream 1873 38941961 ~ 38942183 (+)
G604793 NA non-coding downstream 6496 38946584 ~ 38946891 (+)
G604803 NA non-coding downstream 19874 38959962 ~ 38960174 (+)
G604853 NA non-coding downstream 80221 39020309 ~ 39020529 (+)
G604891 NA non-coding downstream 138102 39078190 ~ 39084490 (+)
G604258 NA other upstream 348473 38584474 ~ 38594822 (+)
G604207 NA other upstream 440105 38499031 ~ 38499662 (+)
G602295 gli1 other upstream 1849011 37089624 ~ 37090756 (+)
LOC110527686 LOC106582662 other upstream 2363695 36573811 ~ 36582978 (+)
G600531 NA other upstream 3968362 34971128 ~ 34971405 (+)
G606400 LOC105027254 other downstream 1186446 40126534 ~ 40141972 (+)
G606452 LOC106582711 other downstream 1266481 40206569 ~ 40206897 (+)
G606464 LOC106582711 other downstream 1283087 40223027 ~ 40224171 (+)
G606469 NA other downstream 1290797 40230885 ~ 40231225 (+)
LOC110527751 NA other downstream 1499012 40438879 ~ 40457742 (+)

Expression


Co-expression Network