XLOC_025355


Basic Information

Item Value
gene id XLOC_025355
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 25645231 ~ 25648375 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052672
CTTAAACTCAGCAGAGAGTTGAGGAGTGTACTGAAATGTCCAAAGTGCTCGGACCAAAACCGCGAGCCGCTCCGTCACCTCTCCTTTCTCGTTCTGCCCGTTCCCGTTCCTTATAAATCCGTTTATTCCGTTGTGACAAACATCCCGTTTATATCGCTCCAAACCAAGATATTCAGCGAGCAGGTCTGTGTTGCTTAAGCACTGCACGACGGCATTCATGAAGCAGGTGTTCCCGTGGTTCTTCAGACCCAGCACACCCGGGGTTTTATCACCGTACAGCGAAAACATTCGCTCTTTCGCGGAGGAACGGCTGGTAAGAGACGAACTTTTCCTCACCTGACTGCTGCTGGTGCTGCTGTCCTCCTTTTTCACCGAGTTTCCCGCGCAAGGTGCGCTTTCTCCAAACCCTCCGTCATCATCCTCAGCATCCGACCGTTCGGCTGTTTCTCCGCCGCTTGCTAAGCttcccaaacttttcaagatCCTACTCACCAAACTTTCCACGGATTTAAACGATTTCCTCCGGAACAGCTTCCCTGTGCGTTTAGTCGACTTGCTTCCTGAGTCTTTATTCGCCTTTTTGTCGCGTTTATCcatatttcttgtttattttccaCCGGATAACGGCGTTCAAGCACACAGAGCGTTGCTCTCCTCACCTGATCCTGCCTCGACACTCAGCATTGTGGACGGCAGCGCAGAGTCTTCCTCGCGCCCGCCGTGAAGGAATGATTGACAGGTAGCGCGGCGGTTTATCACCGCCTCATGTGGACAGAGAACAGACGCTCAGTAAAACGGGACTCACATCAATGCCGTTTTCCGCTTATCTCTCCACTGCCACAGTGACGGAATTCTGTCACAAAACCAGACCACCTACAGTTTTCCATTTCTACAGCATTCAAGCCGAGGTGGGTTTAAACTCATTCTGTCCTCTTTACATTTGTACGATCAGAGGAGATGAATGTCTAGAGAAATGGCCAAAAATGATCTTATTTTTAGATTTCCGGTCCTTTACCCTTTTCTCTACTGAGATCTTATGTGCAAATGAGTTCAAAGTAATGAACACGCAAAGCTTAAAGACTTCTTGTGTGTATAAATGTCTGTAGGTTGGCAGATATCTCTTTCACTGTGGCATCCTTTTTGAAAAAGAGCACATTGAAAGTTATTTTTATCTTCAGAGGTGCATTtgcttcctttctttttttaggCATTCAACTTGATCAAAGACAGAGAACAATGCTGAAAAGAATCATGACATAACTGCTAGCTGGACTGAGTAACCGTTTGCATGTGGACTGAACTGGAAAATGAGAAGATATGTTATTGTAAGTCTGGTTTTAATTTATCTACAAGAGGTAATTCAAAGTAGTCTGGTTTAGCCAAGCCACACCGTTGTGGTTCTCGATTTCTTATGAAACATCTTGAGTTTGAACCCAATATTAACCTCAACCGATTTGCCAGAATGAACAGAGAGACCTTCGGGATAAACAACAAACATGAGGATGGGGTGTGTTGTATCTAAAAACAATCATTATCTCTAAAGCAGCCAGTATAACCTAAATTTAACACAGCACTATTGTGCACTACTACAGTAAGTCTTGAGGGCCAAATAAAGACCAATAGATCGGTGTCTGTGCTTATGTACATTTTATCACCAAGTAACACGtctagaaacattcattcattttcttttcagctta
>TCONS_00052673
GACAGGTAGCGCGGCGGTGAGTACGGCGTCTCCTGTGACGTCAGGCGGTTTGGACAGAATGAATGATTGACAGCGCGTTTTTACCGGCGGTCAGTGGTAGCATGAGCTCCTCCAACTTCATACTGGCGGGAATCTGCGAGCGATGCAATGATTGACAGTTGTGGCTGCGAATAATCACACCCAGGGGGTCGAAAAGAGTTTAAAGTTTTCTTAGGATTTGTAAGGTTCTTTTACTGTTATAAAATGTCAATGGCAAGTCAACATTGACGATCCGAGGGGGTCAACTTTTTTTGGCAATGTTAGTTTGTATAATAGCCTACATATGTTTCAGTGATGCAGTGTTTCAGGGAAACACACaatgtatgtgtttatttaaaatacatctaatttattaataaaatgcatttaagttttcagtgttttcaggGATAGTGTATTCTGACTTACAGTTTCCGATTAGCTACTTCGGAGGTTACTGTATGTCAGCATCCagtttgactttacttttaggctgTATGTATGAACAATTTTACGGGAAAAGTCTTGTGAACAGTTACTTTATTGATTGGAATTACGCATTCACCGTGTTATGAACTATAGAGGTGGACAAAtgcatgtttatattattatttagattacttatattaattttattattaacattattatttaaaatacacagcaaagCAAATAATTTCTCAGTAAAAAGCTGACCCGCCATACATGATGTTTTAATGTCCTTTAATTCATTTGCGTTATAACGTGAAGGCAGCTGTATGTTTAAGTCAACACATATTGTTGTAATTGCCTATTTTTAGTTATTGCAACTTTTGAATAttgtttaaacaattttaagaaaACATTGCCTAAAATTTGGGGAAATATTGACATATAAATTGTAAATTTGTCTGGTGTGTCTGTCTGTTTTCTGACTATAcatcatgggtctcaaactcaattcctggagggccgcaacattgcacagttttgctcaaaccctaatcaaacacagctgatccaactaatcaagcaggtgtgatttggaggtggctggagctaaaatctgcagagctgtggccctccaggaattgagtgtgAGACCACTAATCTATAcgtttagaattttttaaatgattaacaaTATGGAGCCCCCTGCTGTTTAAATGTCACATGTGTCCGCTTAAATAGGCCATGGTTATGATGGATGTTCATCGGGTATTTTTTTTAGTAACCAACATTGGCCTGATAGGATGAATAGACTGCAAAAACAAAATACTCCCAGAATAAAAAAACAGGTCGCTACCTTCGGTTAAACCACTATCTGCTTCCCTCACACTGAACGGTGGATGTTATCATCACCTCTGATTATTTAATTTCGCTCCATCACTTCCACGGTGTATGAACTGCATCCTGTTGCCATATGTCTATTACTGGCCTCTGAATAACCCCACACCTTCACAGGTTTATCACCGCCTCATGTGGACAGAGAACAGACGCTCAGTAAAACGGGACTCACATCAATGCCGTTTTCCGCTTATCTCTCCACTGCCACAGTGACGGAATTCTGTCACAAAACCAGACCACCTACAGTTTTCCATTTCTACAGCATTCAAGCCGAGGTGGGTTTAAACTCATTCTGTCCTCTTTACATTTGTACGATCAGAGGAGATGAATGTCTAGAGAAATGGCCAAAAATGATCTTATTTTTAGATTTCCGGTCCTTTACCCTTTTCTCTACTGAGATCTTATGTGCAAATGAGTTCAAAGTAATGAACACGCAAAGCTTAAAGACTTCTTGTGTGTATAAATGTCTGTAGGTTGGCAGATATCTCTTTCACTGTGGCATCCTTTTTGAAAAAGAGCACATTGAAAGTTATTTTTATCTTCAGAGGTGCATTtgcttcctttctttttttaggCATTCAACTTGATCAAAGACAGAGAACAATGCTGAAAAGAATCATGACATAACTGCTAGCTGGACTGAGTAACCGTTTGCATGTGGACTGAACTGGAAAATGAGAAGATATGTTATTGTAAGTCTGGTTTTAATTTATCTACAAGAGGTAATTCAAAGTAGTCTGGTTTAGCCAAGCCACACCGTTGTGGTTCTCGATTTCTTATGAAACATCTTGAGTTTGAACCCAATATTAACCTCAACCGATTTGCCAGAATGAACAGAGAGACCTTCGGGATAAACAACAAACATGAGGATGGGGTGTGTTGTATCTAAAAACAATCATTATCTCTAAAGCAGCCAGTATAACCTAAATTTAACACAGCACTATTGTGCACTACTACAGTAAGTCTTGAGGGCCAAATAAAGACCAATAGATCGGTGTCTGTGCTTATGTACATTTTATCACCAAGTAACACGtctagaaacattcattcattttcttttcagctta

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052672 False 1700 lncRNA 0.44 2 25645231 25648375
TCONS_00052673 True 2411 lncRNA 0.38 1 25645965 25648375

Neighbor

gene id symbol gene type direction distance location
XLOC_025354 NA coding upstream 20613 25603668 ~ 25624618 (+)
XLOC_025353 NA coding upstream 71698 25572778 ~ 25573533 (+)
XLOC_025352 mchr1b coding upstream 132414 25503442 ~ 25512817 (+)
XLOC_025351 NA coding upstream 336267 25308710 ~ 25308964 (+)
XLOC_025350 c1qtnf6a coding upstream 422569 25216790 ~ 25222662 (+)
XLOC_025356 NA coding downstream 52216 25700591 ~ 25720214 (+)
XLOC_025357 BX120006.2 coding downstream 97261 25745636 ~ 25746918 (+)
XLOC_025358 BX120006.1 coding downstream 103846 25752221 ~ 25753549 (+)
XLOC_025359 pik3r6b coding downstream 176668 25825043 ~ 25846962 (+)
XLOC_025360 FP101990.1 coding downstream 195776 25844151 ~ 25845328 (+)
XLOC_025429 BX649540.1 misc downstream 4600364 30248739 ~ 30249036 (+)
XLOC_025344 CR936416.1 non-coding upstream 585111 25055976 ~ 25060120 (+)
XLOC_025342 NA non-coding upstream 708976 24930580 ~ 24936255 (+)
XLOC_025364 NA non-coding downstream 336964 25985339 ~ 25986944 (+)

Expression


Co-expression Network