G604940


Basic Information

Item Value
gene id G604940
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 39195655 ~ 39244952 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU688980
ctactttgaagaatgtaaaatatatgtttcgatttgtttaacactttttttggttactacatgatccatatgtgttatttcatagttttgatgtcttcactattattatacaatgtaagaaaaatagtaaaaataaagaaaagcccttgaatgagtaggtgtGTCCAAACGTTGGACTGTTACTATATGTGTATGGTTTCCTTCTGGATTTTACTAAACATGAAATGGTGGTTACTACATCGGTAAGAAAGTGGTGACCTACATAAATATAATACTCATTCTAAAACAATTCCTCCACTGATGTTTCAGAATTTAGGATACAGGCCTGTGAATGAGTAGCCCAGTAAGTAAGGCTTTGCTGTACTGTTCTAACACAGAGATGCATATTTCAGTGGTAAAGCTTGTTCTTTAGAGCAAGCAGATGGTGCTATTAATTAAGCTACCAAACCAAACTGTCTCTGACACGTCACGACAGACAACATCATAGAAAGATAGACTTCTGGATTTGTGACTTCTCAACTTCATCAGCAATATCAACACCATTGTTTTATTTCTGCAGTTTCTGCAGTTTGCACGATGCCACTTCGGATGTTTGCAAGTGGTGATTCGATGTACTATCAGGATCTAGAGCAtattttgtttttatatataCTCCTTGTTTTATTTTTCTTCCAAACTTGTACACAACATTGAATCCCGTTTTGATTGTCAAATTAAGTAAATTTGGTACTACTTATAATATTCAAAAGAACACAGGGTCAACCCTGGAATTCATTGTACTCTGCATAAATTGCTGTATGAGGTCTTGTTATGTTAATCATTGTTTACAAATGTCAACCAAACTGAGTTAACATCATGTTCTGCAATTTGTTTACCATTTGGAATGTTGTCGTTTTTAACCCTTTTTCACCCTTCAAGCAATCCTGATTTGTCTGCTTCCTATGTTCCAACAGGttgagtaaaaataaaaaaggaaatttGTGACCATTGTTATTCATCGACTAAAGCTGTTGTAGATGGCCGTACAATAGTCTTTTATGGTTTATTCTGATGTACGGTGTCTGTTTTCTTGTGGGCATGGTGTTTTCACACAAGCCTttcatatttctgtatttctcgAGGTCATACTGTTAGTCTTCCcaaacttgttttttttatacTACTTTTTTTTATCGGAGTACCTTGCAGTCTGCTTTGCTTGTGTTTTGTGTTCGATGGGGAGTTTTtaattattttcttttttttaagcgGTGTGGCATGGTGAGTGGATGAGTGGAGAGTTTGCATAGTCTTATGATAGAACATTTATGAGAAGAAAAAATGTCAAATTCAAGCATATTTCCTGTATGTATAAATTAAGATTTGTATGATTAAATTAACACTGAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU688980 True 1386 lncRNA 0.34 2 39195655 39244952

Neighbor

gene id symbol gene type direction distance location
lhfpl5a LOC106582689 coding upstream 491611 38690340 ~ 38704044 (+)
LOC110527711 LOC106582683 coding upstream 928309 38260379 ~ 38267346 (+)
LOC110527709 cdd coding upstream 1025401 38162615 ~ 38170254 (+)
LOC110527708 LOC106582612 coding upstream 1034757 38128380 ~ 38160898 (+)
LOC110527704 LOC106582678 coding upstream 1154718 38035996 ~ 38040937 (+)
LOC110527730 LOC106582703 coding downstream 46704 39291656 ~ 39310234 (+)
LOC110527735 LOC106582706 coding downstream 125778 39370730 ~ 39376856 (+)
LOC110527736 LOC106582707 coding downstream 188237 39433189 ~ 39773724 (+)
LOC110527739 LOC106582710 coding downstream 747814 39992766 ~ 40027458 (+)
csrp1b LOC106582712 coding downstream 1038601 40283553 ~ 40287403 (+)
G604923 NA non-coding upstream 56019 39138458 ~ 39139636 (+)
G604891 NA non-coding upstream 111165 39078190 ~ 39084490 (+)
G604853 NA non-coding upstream 175126 39020309 ~ 39020529 (+)
G604803 NA non-coding upstream 235481 38959962 ~ 38960174 (+)
G604793 NA non-coding upstream 248764 38946584 ~ 38946891 (+)
G605027 NA non-coding downstream 80169 39325121 ~ 39333637 (+)
G605063 NA non-coding downstream 93914 39338866 ~ 39339150 (+)
G605077 NA non-coding downstream 108677 39353629 ~ 39353918 (+)
G605079 NA non-coding downstream 110567 39355519 ~ 39355791 (+)
G605110 NA non-coding downstream 162422 39407374 ~ 39407581 (+)
G604258 NA other upstream 604361 38584474 ~ 38594822 (+)
G604207 NA other upstream 695993 38499031 ~ 38499662 (+)
G602295 gli1 other upstream 2104899 37089624 ~ 37090756 (+)
LOC110527686 LOC106582662 other upstream 2619583 36573811 ~ 36582978 (+)
G600531 NA other upstream 4224250 34971128 ~ 34971405 (+)
G606400 LOC105027254 other downstream 881582 40126534 ~ 40141972 (+)
G606452 LOC106582711 other downstream 961617 40206569 ~ 40206897 (+)
G606464 LOC106582711 other downstream 978223 40223027 ~ 40224171 (+)
G606469 NA other downstream 985933 40230885 ~ 40231225 (+)
LOC110527751 NA other downstream 1194148 40438879 ~ 40457742 (+)

Expression


Co-expression Network