G605027


Basic Information

Item Value
gene id G605027
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 39325121 ~ 39333637 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU689072
gtacatggtccAGCACATTTTTTTTCTTGTGGGGCAGAATAAATGTTGTTGATATTTtggcaaacattttttttagcaGTGCTTGGTTAAAGTCACCCACAAAAAAAAAGACTGCTTCCAGtgattggaCATATGCCATCAAGATACTAGGAGGAGGAGACCGTGTAGCACGTCTTTTCTGCTGAGCTTTGAGATCCCccttttcttcctcttcttcatcgCCGGAGCTGCTTTCAGTCATCCTTGTCAGCAGCAACAAAGTGATGACCAATGAATTAATGACCCACTTCAATATGAAGGGACAGAGGAGCGAACATGCCTTCGCTACCACTCGTGTGTTCCATTGTAGTTGAAGCTGTCTGTGCCATCCTCCTGGCTGGCGGACTCATCGTAGATGCCCGACATGATCCTAGAGGGCTTGAGGAGGTTCTGGGAGGCTGCAGCAGAGTCACGGTCGTCATGcactgaggggaggagagagaggatcgTCAATAATAGCAATACAATGGTGATCAGTTGCTTTTATCCAAACTACAAAAAATATGCAAAGAGGCCATTTCAGAGATTGCGTGTGGGAATTGAAAACCAACTATTTAAGTGGTCCATGTGAATATAATGTTCCCTTTCTTTCACAATATCATGACATGTTATTCAGATGTAGAAGATGTGAAAGAACTAATGACAGAAGAGCAACAGAAAACAACAGTTTTATTCAGTCACTGTCCTCGCTCAGTCCCTTCAAATTCAGATATACAGTAGGCAAGCTACCAGTTTCAAATACAGGAGGTAGTATTAAGAAAGTGATCAAGTTGCTCATCCTGAGAATGTACACAGACATTGTGCCAAGACACAGTTGATTTATCTGTTAATAAAGCACTGTTTGTCTGTTAATAAAGGAATCCCTGATGTGGCCCCTTGCATTATGGAGGAGTCAACtgtacccagctagcacatttggttccttggaagttgtgggaacgtatgtttttggtttcccattggttcagggaatgaagccatacgtttcctgacaGGTGGAACTGAAcgttttttaaatgttctgaaaacggaagtgaaaatgttgcctgttctgggaacaaaaatgtttaggttgcagggaggttctgagaccATTTTACTGAGGTTCCTTGAAAGTT
>TU689073
gtacatggtccAGCACATTTTTTTTCTTGTGGGGCAGAATAAATGTTGTTGATATTTtggcaaacattttttttagcaGTGCTTGGTTAAAGTCACCCACAAAAAAAAAGACTGCTTCCAGAGTGATGACCAATGAATTAATGACCCACTTCAATATGAAGGGACAGAGGAGCGAACATGCCTTCGCTACCACTCGTGTGTTCCATTGTAGTTGAAGCTGTCTGTGCCATCCTCCTGGCTGGCGGACTCATCGTAGATGCCCGACATGATCCTAGAGGGCTTGAGGAGGTTCTGGGAGGCTGCAGCAGAGTCACGGTCGTCATGcactgaggggaggagagagaggatcgTCAATAATAGCAATACAATGGTGATCAGTTGCTTTTATCCAAACTACAAAAAATATGCAAAGAGGCCATTTCAGAGATTGCGTGTGGGAATTGAAAACCAACTATTTAAGTGGTCCATGTGAATATAATGTTCCCTTTCTTTCACAATATCATGACATGTTATTCAGATGTAGAAGATGTGAAAGAACTAATGACAGAAGAGCAACAGAAAACAACAGTTTTATTCAGTCACTGTCCTCGCTCAGTCCCTTCAAATTCAGATATACAGTAGGCAAGCTACCAGTTTCAAATACAGGAGGTAGTATTAAGAAAGTGATCAAGTTGCTCATCCTGAGAATGTACACAGACATTGTGCCAAGACACAGTTGATTTATCTGTTAATAAAGCACTGTTTGTCTGTTAATAAAGGAATCCCTGATGTGGCCCCTTGCATTATGGAGGAGTCAACtgtacccagctagcacatttggttccttggaagttgtgggaacgtatgtttttggtttcccattggttcagggaatgaagccatacgtttcctgacaGGTGGAACTGAAcgttttttaaatgttctgaaaacggaagtgaaaatgttgcctgttctgggaacaaaaatgtttaggttgcagggaggttctgagaccATTTTACTGAGGTTCCTTGAAAGTT

Function

NR:

description
protein kinase C and casein kinase substrate in neurons protein 1-like isoform X2

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU689072 False 1157 lncRNA 0.43 4 39325121 39333637
TU689073 True 1019 lncRNA 0.42 3 39325121 39333637

Neighbor

gene id symbol gene type direction distance location
LOC110527730 LOC106582703 coding upstream 14887 39291656 ~ 39310234 (+)
LOC110527729 LOC106582701 coding upstream 84913 39228701 ~ 39240208 (+)
LOC110527727 LOC106582699 coding upstream 123543 39191081 ~ 39201578 (+)
lhfpl5a LOC106582689 coding upstream 621077 38690340 ~ 38704044 (+)
LOC110527711 LOC106582683 coding upstream 1057775 38260379 ~ 38267346 (+)
LOC110527735 LOC106582706 coding downstream 37093 39370730 ~ 39376856 (+)
LOC110527736 LOC106582707 coding downstream 99552 39433189 ~ 39773724 (+)
LOC110527739 LOC106582710 coding downstream 659129 39992766 ~ 40027458 (+)
csrp1b LOC106582712 coding downstream 949916 40283553 ~ 40287403 (+)
tnni1b LOC100462680 coding downstream 958403 40292040 ~ 40296179 (+)
G604940 NA non-coding upstream 80169 39195655 ~ 39244952 (+)
G604923 NA non-coding upstream 185485 39138458 ~ 39139636 (+)
G604891 NA non-coding upstream 240631 39078190 ~ 39084490 (+)
G604853 NA non-coding upstream 304592 39020309 ~ 39020529 (+)
G604803 NA non-coding upstream 364947 38959962 ~ 38960174 (+)
G605063 NA non-coding downstream 5229 39338866 ~ 39339150 (+)
G605077 NA non-coding downstream 19992 39353629 ~ 39353918 (+)
G605079 NA non-coding downstream 21882 39355519 ~ 39355791 (+)
G605110 NA non-coding downstream 73737 39407374 ~ 39407581 (+)
G605111 NA non-coding downstream 75492 39409129 ~ 39409333 (+)
G604258 NA other upstream 733827 38584474 ~ 38594822 (+)
G604207 NA other upstream 825459 38499031 ~ 38499662 (+)
G602295 gli1 other upstream 2234365 37089624 ~ 37090756 (+)
LOC110527686 LOC106582662 other upstream 2749049 36573811 ~ 36582978 (+)
G600531 NA other upstream 4353716 34971128 ~ 34971405 (+)
G606400 LOC105027254 other downstream 792897 40126534 ~ 40141972 (+)
G606452 LOC106582711 other downstream 872932 40206569 ~ 40206897 (+)
G606464 LOC106582711 other downstream 889538 40223027 ~ 40224171 (+)
G606469 NA other downstream 897248 40230885 ~ 40231225 (+)
LOC110527751 NA other downstream 1105463 40438879 ~ 40457742 (+)

Expression


Co-expression Network