XLOC_025356


Basic Information

Item Value
gene id XLOC_025356
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 25700591 ~ 25720214 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052674
CATCTTTTGGTGAAAATAATCACTACACGATTACTTTGGTACGTTGACCAGCCTGCTTTGATGGTCGCTCTTTTTTAAGAGGATTTGCTCGGAATCGAAAGAGAACCAACAGTGATATAGCAAGTGAAAAGAATGAAAATTAATCAGCACTTCCCTCTCTTGTCGCGCTGCTGGAACTTTCTGAGGCGACGGGCCCACAGGTCTTTCCAGGGGATGAGTAGGCTGCCCCTGTCCGCCACCACACCGCTCTGCCCACGCGAGTCCTCCTCCTCATCGGAGCCCATCAGCAGCACGTGCACCTGGACAGCTGTGGAGAGAAACAGACACATCAAAGACGCTTTAATGCTGTGATCACTGGCACTGATTTCAGCAAAGCCTGCCAAACTGGCACATTTACTGTCTGAATCCAGTACTGAGAGTCAGATACGCCATGCGGGTGGCAAACGCTTTCCAGATTTGTGCAGcgcattgtgttctggtTCTTGACTGTTtatagaccattgtcaatcaatctcctctgtgccgtgtctcctgtacagtacagaacgTGTTCAGCTTCGCAAATTTACATGAATCTTCGATCACTAGCAGCGTGACTCTgaaatgctgtactgtatgtttgcaagttttctccccacaatgttGACAAAGTGTTCTGCACCGtcaaaggcacctgcggtagcacccgaaaggcagaggaagatgctaacaaTCGCGcaaaaagttgaacttctggacatgctaaggaaggtagaagttacacAATTACGTGGGTGAAATTATGAAAACAATTCATGAGGATCAAATGGTTTTgttctttggtttcattctataatactggactttgAGAGTGtataaacaagagagaaaagtgaaaatgttaatgcctgtctgagacaAGTGTATGTGTAGTGAGGAGTTTTACAaccttaaaacatttataataattgtaaaacataAAGCGGATAACTTTGCGAATCTCACCTATTGCGGGTTGTTTTTAGAAAGTAACTCCTGCAAGTAATAAGGGACCACTGTATTTTTTTTAGCATGAAAACATATCTTTTCTAAGTTGTATCTACTACTTATTAAAACATATAAGAGAATTAGACATCAATGTAAATTCAGTTgttcataaattaataaaaacatattgcAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052674 True 1159 lncRNA 0.42 5 25700591 25720214

Neighbor

gene id symbol gene type direction distance location
XLOC_025355 NA coding upstream 52216 25645231 ~ 25648375 (+)
XLOC_025354 NA coding upstream 75973 25603668 ~ 25624618 (+)
XLOC_025353 NA coding upstream 127058 25572778 ~ 25573533 (+)
XLOC_025352 mchr1b coding upstream 187774 25503442 ~ 25512817 (+)
XLOC_025351 NA coding upstream 391627 25308710 ~ 25308964 (+)
XLOC_025357 BX120006.2 coding downstream 25422 25745636 ~ 25746918 (+)
XLOC_025358 BX120006.1 coding downstream 32007 25752221 ~ 25753549 (+)
XLOC_025359 pik3r6b coding downstream 104829 25825043 ~ 25846962 (+)
XLOC_025360 FP101990.1 coding downstream 123937 25844151 ~ 25845328 (+)
XLOC_025361 mfsd6l coding downstream 129346 25849560 ~ 25852579 (+)
XLOC_025429 BX649540.1 misc downstream 4528525 30248739 ~ 30249036 (+)
XLOC_025344 CR936416.1 non-coding upstream 640471 25055976 ~ 25060120 (+)
XLOC_025364 NA non-coding downstream 265125 25985339 ~ 25986944 (+)
XLOC_025371 NA non-coding downstream 356280 26076494 ~ 26080400 (+)

Expression


Co-expression Network