XLOC_025358 (BX120006.1)


Basic Information

Item Value
gene id XLOC_025358
gene name BX120006.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 25752221 ~ 25753549 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050034
AGGAGGCAAGAATCATAAAAAACTGCAGCCGACTAGCAAGGACTTGCAGGAACCGCACAGAACAAAGAGATCTTCACAAAACGAGAGAAGAAGGTGGTCTTTGGAGGAGATCAAGGCCGTGGAGAAGACAATGATGGAATTCATAATGTCTGGAAAGGTTCCTGGTAAAGCCCAGTGCATGAACTGTATCGAAAGTTCCCCAGCAGCACTTCAAAATAGAAGTTGGGAGGGGGtgaaattttatgtaaaaaatcgCATTGATTCCCTAAAGAAAAAATTGTGAAAGGTAAGGACCTtcatctaattatttttttcGTGTCTGCCGGAAGAAAGAAaatttattacttaaaaaaatgtgaaaggtAGGTGAAAGGGCCTTCACCACTGTTTTTTCTTCATGATTGTTGAAAGCAACAAGTTTGATTTcattaaagcaaaaaaatgtaaaagggcCTTCACCAGTTTTGTCTTTGTTAAAGGCAACATGTATGTGAATCTTGTTTAAGCAAACTCAACATGCATCTGCTTAAAGAGCAGTATACTAAAACGTTcatgttaacatttaaataaatgtttaaaacactaaaa

Function

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0044085 cellular component biogenesis biological_process
GO:0030099 myeloid cell differentiation biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0002520 immune system development biological_process
GO:0002262 myeloid cell homeostasis biological_process
GO:0000027 ribosomal large subunit assembly biological_process
GO:0000028 ribosomal small subunit assembly biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0065003 protein-containing complex assembly biological_process
GO:0008152 metabolic process biological_process
GO:0034470 ncRNA processing biological_process
GO:0043009 chordate embryonic development biological_process
GO:0006364 rRNA processing biological_process
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0048534 hematopoietic or lymphoid organ development biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0007275 multicellular organism development biological_process
GO:0048821 erythrocyte development biological_process
GO:0006412 translation biological_process
GO:0030218 erythrocyte differentiation biological_process
GO:0048856 anatomical structure development biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0048872 homeostasis of number of cells biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0042255 ribosome assembly biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0000470 maturation of LSU-rRNA biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0042274 ribosomal small subunit biogenesis biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0070925 organelle assembly biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0034622 cellular protein-containing complex assembly biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034101 erythrocyte homeostasis biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0032502 developmental process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0009790 embryo development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0044391 ribosomal subunit cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0005829 cytosol cellular_component
GO:0005840 ribosome cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0015934 large ribosomal subunit cellular_component
GO:0015935 small ribosomal subunit cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0043226 organelle cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0005737 cytoplasm cellular_component
GO:0019843 rRNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000097089

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050034 True 588 lncRNA 0.37 2 25752221 25753549

Neighbor

gene id symbol gene type direction distance location
XLOC_025357 BX120006.2 coding upstream 5303 25745636 ~ 25746918 (+)
XLOC_025356 NA coding upstream 32007 25700591 ~ 25720214 (+)
XLOC_025355 NA coding upstream 103846 25645231 ~ 25648375 (+)
XLOC_025354 NA coding upstream 127603 25603668 ~ 25624618 (+)
XLOC_025353 NA coding upstream 178688 25572778 ~ 25573533 (+)
XLOC_025359 pik3r6b coding downstream 71494 25825043 ~ 25846962 (+)
XLOC_025360 FP101990.1 coding downstream 90602 25844151 ~ 25845328 (+)
XLOC_025361 mfsd6l coding downstream 96011 25849560 ~ 25852579 (+)
XLOC_025362 zgc:171844 coding downstream 103459 25857008 ~ 25894124 (+)
XLOC_025363 tom1 coding downstream 153717 25907266 ~ 25939259 (+)
XLOC_025429 BX649540.1 misc downstream 4495190 30248739 ~ 30249036 (+)
XLOC_025364 NA non-coding downstream 231790 25985339 ~ 25986944 (+)
XLOC_025371 NA non-coding downstream 322945 26076494 ~ 26080400 (+)
XLOC_025374 FP016144.1 non-coding downstream 440795 26194344 ~ 26194459 (+)
XLOC_025382 NA non-coding downstream 601745 26355294 ~ 26361798 (+)

Expression


Co-expression Network