Gene
RNA
| Item | Value |
|---|---|
| gene id | G606193 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048571.1 |
| NCBI id | CM023225.2 |
| chromosome length | 90918291 |
| location | 39936197 ~ 39941278 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| PREDICTED: retrotransposon-like protein 1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU690294 | False | 426 | lncRNA | 0.55 | 2 | 39936197 | 39941278 |
| TU690295 | True | 426 | lncRNA | 0.55 | 2 | 39936197 | 39941278 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110527733 | LOC106582705 | coding | downstream | 534242 | 39377108 ~ 39401955 (-) |
| LOC110527731 | LOC106582704 | coding | downstream | 566670 | 39315167 ~ 39369527 (-) |
| LOC110527728 | NA | coding | downstream | 708424 | 39211234 ~ 39227773 (-) |
| LOC110527726 | LOC106566095 | coding | downstream | 754948 | 39179704 ~ 39181249 (-) |
| LOC110527724 | LOC106582698 | coding | downstream | 772563 | 39131441 ~ 39163634 (-) |
| LOC110527738 | LOC106582708 | coding | upstream | 85929 | 40027207 ~ 40101150 (-) |
| LOC110527740 | LOC100194559 | coding | upstream | 174309 | 40115587 ~ 40134473 (-) |
| LOC110527741 | LOC106582711 | coding | upstream | 194020 | 40135298 ~ 40275270 (-) |
| pkp1b | LOC106582715 | coding | upstream | 383228 | 40324506 ~ 40346140 (-) |
| smpd2b | smpd2 | coding | upstream | 406783 | 40348061 ~ 40360586 (-) |
| G606010 | NA | non-coding | downstream | 152808 | 39782812 ~ 39783389 (-) |
| G606001 | NA | non-coding | downstream | 165348 | 39767234 ~ 39770849 (-) |
| G605882 | NA | non-coding | downstream | 349889 | 39579623 ~ 39586308 (-) |
| G605847 | NA | non-coding | downstream | 372829 | 39528933 ~ 39563368 (-) |
| G605801 | NA | non-coding | downstream | 461944 | 39473871 ~ 39474253 (-) |
| G606212 | NA | non-coding | upstream | 23120 | 39964398 ~ 39964624 (-) |
| G606216 | NA | non-coding | upstream | 25351 | 39966629 ~ 39966904 (-) |
| G606517 | NA | non-coding | upstream | 167805 | 40109083 ~ 40109322 (-) |
| G606550 | NA | non-coding | upstream | 240293 | 40181571 ~ 40181794 (-) |
| G606557 | NA | non-coding | upstream | 248813 | 40190091 ~ 40190318 (-) |
| G606135 | NA | other | downstream | 94866 | 39838891 ~ 39841331 (-) |
| LOC110527723 | LOC106582696 | other | downstream | 867369 | 39063005 ~ 39123578 (-) |
| G604484 | NA | other | downstream | 1296797 | 38584293 ~ 38639400 (-) |
| G604485 | NA | other | downstream | 1338678 | 38589155 ~ 38597519 (-) |
| G601245 | NA | other | downstream | 4174927 | 35760699 ~ 35761270 (-) |
| G606973 | NA | other | upstream | 687971 | 40629249 ~ 40629880 (-) |
| LOC110527764 | LOC106582736 | other | upstream | 1215392 | 41156665 ~ 41348915 (-) |
| G607932 | NA | other | upstream | 1219870 | 41161148 ~ 41163397 (-) |
| G608888 | LOC106582750 | other | upstream | 2003293 | 41944571 ~ 41951244 (-) |
