G606414


Basic Information

Item Value
gene id G606414
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 40135762 ~ 40140407 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU690532
agtCAGTAACAAGCTTTGCAAAATAATTATGACTATTCAGCAACCTGTATTGGCCTTCGAGTGGAAATACTTCATTTCCAAGAACTTCAGATTTGTTTAAGATTTTTTGAAGACCCTGATATAAAAAATGTTGATTTatcttagattttttttttaaatcaagtttTTATGTTGAACTATGAACTTAGATAATATTTCAATTGTGCCCAACTGCAATACAGGCCTAAATCTTTGGACAACAAACTCTATAACCTACACATTATATCCCTCATGTGACCAACCTGAGTTCAAACCCGGGTTTCCTGTGCGCCACAagggtatgttagcccactgagctaaagcccaGGTTTTTCCCACCAATTCAAGGTCAGGTGGTGTCTTGTGGGACCAAGGTTTGACACAAAGCATCCCTTCCATTGTCAAAGGTTACATACTCACTCTGTCTCAATGCAACACTTGCATCAAAATTCACATTAAGGCATAGTCAAACCCTGCCTGGAAAACTATCTCATAATCGTCATTTGGTCCAACTTACTGCAAGACTGGGGCAAGACTGGGTTTGTAAGCTTTCAGAACAATTTTGACCGTTTTCTTTTCTCTAATTGCCAACACCAGTAGAAGTTGCTGCATAGTCCTGATACAAAAGATAGTTAGCAAAACACACAGCACGACAGCGCAACAGCCACAACGACCAGTGAATGAGATGAAGAACGAGCAGAATGGCATTTGTTTGCTTGCATACATAGATACGGGGTATAATATACTCTTCTAAATGGTAAAACAATGCAGTTGTTAATGAGGCTAATCATTAAGATGACAGAAGGTTCATATGGGTCTAGTAGGCTGAGTTAACACAGGCAGCCCAACTCTGATCTTTTTCCTCTTATTGGTCGTTTGGCCAATCCGATCCACTCTTTCTACACTAATTAGGCAACAAGATTAGAATTgcactgcctgtgtaaacgcagccatggTGTCATTGTGAAATGGATTGGCCAAAGGGGCATCTTTTCACACATATGGTTATTCAAGGATTCctttcaatttgtaaaaatgtgaccACACAAGGCAGCAAAAGCAATTCGCTTTAAGTCATCAGATGGAGTCGCTTTACAGTTTGATGCAAAAGCATACCAAAAAACTGAAGTAAAAAGGGAATGTACCATGTTTTAACTTCATCGCGGTGGTTTAGTTGCACTCTGCTTAATAATGACCTTGTGACAGTGTGCACCATTTCTTTCTGTTGTGATAACCGTTGTACAAAGAAAGCAATCTGACATTAAATGGCACTTTATACACAGGTGACTTATTATAAAGGGATTATAGAGTCCCAAAACACAGACTGATTCTCCTACATTGTTTCAGCATCAGCCAGTATGGCCAGTTGTATCTTTTGAGAGCACTGCCGTAACCCACTATACTCTAAAGTGACCCCATTATACAAAGATGTACATCGTCTTTGACTTCTATCTTGTTTTGATCAACCGATCTTTCTATGTTCCATGCCTCCGAAGTGGGAAATGGTCCTTGATCATTGCTATGCGCAAACAGATGATTATTCTGTTTTATGCTGTGTGTCTGAAAGGTCATAACCTAAAACCAAAGGCGAGCAAAGcaatagtaccagtcaaaaagagGGGAGAGCACCATTGGTTGCTACAGTGGATGAAAGACTGTTATTAATAGCAGAGTTAAACCTGTGTCTGACGAAAAGGAtttgtggagtgcaacagagaACTCTAAATAATGATGTTCAACTCACCCCGGGGTCTTGGTAATATGCCCAAATACATGTTTTCTACAAGGAATGAGACCGTAGCTTTGGGAAAAGGCTATTTTCGAAAGCACCTAAATGTTCTGCGATGTTATACGGCTACCACATTGAGTAAAATATCCACGTGTACATTCTTTTTTAAGCACTTTTATGCTCTGACCCCACACTAGACTGTCAACATGCAAGATTACAGTAAAGTATTTGGATCAGCATATTAGGCATTTGCGCCATGCGACTAGTGTAGATAAAATAACTGAAATCGATATTGGAAATAAAGCATTGAGCAAAATTAACTATACCGAATCATGTCGTGGAATAGATTAGACCATACCTCACCATATTCAAAATAAAAGCCAAGCAATATCTGAGCCAGAAGCAAATAGTAGTTGCTTATGCgttattccccccccccaaaaaaaactttCTCAGTAATACCTGATTTTATATGTTGGTAGTGCTGGCGCGGCCTTCTATCTTCAAACGGATAGTTGGATTTCAAATCTATGTCTGTATGTCAGTTCAGTCAAATTAATTCAAATGTATGCTGCTTGCAACTAAATGAGGAACTAGTACCACAGAAGCTGAAATGTAGTATGTACTGATGACATCTTTAAATGTGTTGGTTAGAGTGGACAGCATTTGTCATTTTGCAATGAATGATAAGCAAAGATATTAACCATAAGGAAATAACCATGTGTCCGTGTGCTGCTCTGTTCAACCCTGTTTTCTTCACTTGACCGTGAAAGCCTGATCCCCACCATCTAGACTACCTGGAACACATTGTTTATCCCTCAAATATAGTTAAGTGACATTAAAATCAACCCTGAACTACCCACAGTTGacctgcaaaaaaaaaatatataaatcagCTGGCGGGTGGAATGAACACATTTCCTATCAACGGTTGTGATGGTGGAATACACCATCGTGGAAACAGGTGCTGCGTGACTGAAATCCCCGGTCTGGAAGGATTTTGGAGTCCATGTGGACAAGGACAACAACCCGGTATGGACACAGCCTGCAAAAGTGCAAGCAGGTATTTGTTTATGTTAATTCAGTTAATATAAGTTCATTATTACAATAATTCAGGCTTTCATTTATTTAGACCATACACAGGCCATATACAGTTTGGTCCTATGAGGCTGGTAAACGTTTGAGTAGCCAATAGCCTACTGGCTATTtttgcagcctacagcctattcAGTTATGGGAAATGTTTACTTACGTTTGAATGTAAAGGTATTGTTTTGTTATGTCGGCTATAGGCTTTCGTCAAGTAAGAAGAAGGCTAATTAAATAGGATCCTGTTCAAAGCGATGTGAGTTGTCAATGTGCCGCATTGCATTGTGAAAATAAGAACATAGGCCTTAATTCATGGCATGGTTTCATTTTATCCAAACATTGAACAGACAAATGAATTCCTGCAGGGAATGGGAATAGCCTGAGGggtaaatgtggaagacacacctcagttgaatgcatttctgtacaacttcctaggtatccccctctcccttactACTCTGGAGTCATAAAAACAGTCAAACAAATATATGTCATTTGGAGTGTCATGGATCGTCTCTCGGAAACAACTCTATGCAGAGGAAAATCTGTCCTGATGTCGGATATCGGGTGAGGCTCGGAAATGATGTGGACGGGAGCGGGTGCGGCTCCAAAATAAACTGACCTGTGCAGGACTGCACTGAACTAGGCGTGGGGGGCAAAAAGTCAATGTCCTGGCACTCACTACTCTGATCTGAGGCGATGGTTATGAAGCAAAGCACCACTGTTGTATACTGCTGTTCATCTTGAGGTTATCATAAGGAATATATTTATTAAGGCATTCAGTATGTTTGGTCACAGAGTCAAAAACAAGTTCACCTGGTTATGTATAAAGAGTTGCATATGTCTAAGATTTGGCCTTCAAATATTGATTGATGGATATGTATTCAGGACCAGGACTATTCAACCTGACGAGCCATACAACATGCCGCCATACTCTTTCCGATAAGCACAAAACGGGGTCTCCAACTGACTTAATTGTACATGCACACTGCAGGCCATGTTGCTGTTGCTGAGCAAAAGTTGACAAGCAAGAATGGTGCTATTTTGTCATTTGAACTTGCTGTTGGAAGACTCACCTGCTTAGACCAATGAGAGATGAGGATTCATTTCTAAAGTAAGAGTGATACTTATTATCTCGATAATTAGCACCTGTTTCTATCGAGGGTAGCAGTGATAGAGAGAAGGCTTCAGTAAAGAAAGAGAGACTTTATAATGTGTATTGTGAATATAACCTCTAGTTCAAGAAATCAAAAATGTTTTCTCTCACTATAATATATGTTGGTATGACTTGGCATGATTGAATACAATTTCAAAACATCAAAACAAAATGGCTTCTCATTCAACCatatgtagtgtgattgttgtttgCGGAGATTAAAGATAAGGTCCAAAAGGAGCAGAAAACTATATTGGAGTTTTTGTTCCTGAATATTATGAACTGTGTATACTAGAGCTCACATAGGGGTAAATATTTAGGGGCTATTTGAAGGGCTAGGTTTTGAGTCTACAGTTGAAGTTCACGTTCAAAATGTAGGGAGGCTGGGGTCCATTGTTTCTCTGTCCGGAGATTCAATGCAGTTGGCTGCCTCTTGCAACTTCAACAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU690532 True 4443 lncRNA 0.40 2 40135762 40140407

Neighbor

gene id symbol gene type direction distance location
LOC110527739 LOC106582710 coding upstream 108304 39992766 ~ 40027458 (+)
LOC110527736 LOC106582707 coding upstream 362038 39433189 ~ 39773724 (+)
LOC110527735 LOC106582706 coding upstream 758906 39370730 ~ 39376856 (+)
LOC110527730 LOC106582703 coding upstream 825528 39291656 ~ 39310234 (+)
LOC110527729 LOC106582701 coding upstream 895554 39228701 ~ 39240208 (+)
csrp1b LOC106582712 coding downstream 143146 40283553 ~ 40287403 (+)
tnni1b LOC100462680 coding downstream 151633 40292040 ~ 40296179 (+)
tnnt2b LOC106582714 coding downstream 164715 40305122 ~ 40314447 (+)
LOC110527751 NA coding downstream 298472 40438879 ~ 40457742 (+)
LOC110527752 LOC106582721 coding downstream 333359 40473766 ~ 40481140 (+)
G606412 NA non-coding upstream 10265 40115588 ~ 40125497 (+)
G606411 NA non-coding upstream 27153 40108369 ~ 40108609 (+)
G606409 NA non-coding upstream 27894 40107638 ~ 40107868 (+)
G606405 NA non-coding upstream 33459 40102056 ~ 40102303 (+)
G606436 LOC106582711 non-coding downstream 36243 40176650 ~ 40176947 (+)
G606439 NA non-coding downstream 38774 40179181 ~ 40179502 (+)
G606442 NA non-coding downstream 46380 40186787 ~ 40187269 (+)
G606450 NA non-coding downstream 55494 40195901 ~ 40196105 (+)
G606462 NA non-coding downstream 79847 40220254 ~ 40220539 (+)
G606400 LOC105027254 other upstream 1312 40126534 ~ 40141972 (+)
G604258 NA other upstream 1544468 38584474 ~ 38594822 (+)
G604207 NA other upstream 1636100 38499031 ~ 38499662 (+)
G602295 gli1 other upstream 3045006 37089624 ~ 37090756 (+)
LOC110527686 LOC106582662 other upstream 3559690 36573811 ~ 36582978 (+)
G606452 LOC106582711 other downstream 66162 40206569 ~ 40206897 (+)
G606464 LOC106582711 other downstream 82768 40223027 ~ 40224171 (+)
G606469 NA other downstream 90478 40230885 ~ 40231225 (+)
G606977 NA other downstream 493774 40634181 ~ 40634439 (+)

Expression


Co-expression Network