XLOC_002536 (CABZ01073795.1)


Basic Information

Item Value
gene id XLOC_002536
gene name CABZ01073795.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 4367430 ~ 4375190 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004726
AAAGAGGCACTGCAGTGCAGACCGAGCTGCAGACTGTCTGAGAAACTGCAAGTCACCTTTTCGGCTGGGAAAAGACAAAATACCATGGGAAACGCACCATCTGAACCAGCACCACCATCCCTGGaaCTGGAGAAGCCATGGAGAAAATTTGACTGGAGACAGAAAAATGAGCTGAAGAAGCGTTTAGAGGAGTTCTCTGTGAGTCATCCAGATGTAAAGTGCATCAATATCCTGGTTGCTGGACAAATCGGTGCAGGGAAGTCCAGCTTTATTAATTCTGTCAATAACACATTCCAAGAACGAATGACAAGTTCGGCACTGGTTGACTCATGTGGAGGCACTAGTTTTACAAAAgaaCTAAAAGTACACCGAGTCAGAGGTGTAAAAGGGGATTTACCTTTTTACTTGAGTGACATCATGGGTTTAGAAGCTAAAATACTGGCAGGGACTCTGCCGGAGGATGTCATAAAAACCATATATGGATATGTGAGGGATGAATACAAATTCAACCCAGAGATGTCAATCAGTGACAAGAATCAAGATTACGTCAATGACCCGTCACTCTCAAACCAAGCTTTCTGCCTGGTTTATGTCGTGGATGCAAAAACAGTCCAATACATAGATCAAGGACTTATTGATAAGCTGAAGATAATCCGCCATGCCATCAGCCATGACAGGATTCCTCAAGTGATCGTTATGACAAAAGTGGATGAAGCCTGTCCACTAGTGAAGGAAGACCTAAGAAAGATCTACACCAGCAAGAAGATCAAAGAGAAGATGGAGATGTGCAGTGAAGCCATTGGTGTGCCAGTGAACTGCATCTTCCCAGTCAAGAACTACTGTGAGGAGATTGACGtggatgatgatgttgatgttcTCATTCTGAAGGCATTTGACCAAATTGTAAACCTTGCTAATGACAGATTGAGAGACAGAGCTTCAGAGTAAAGTAAAATGTAAAGGCATTACTGTAAATGCAGCCATTTTTTTTGTGTATATCAAGAGAtacctaatgctgtgttcacaccagacgcggaagaagagagtgatttacatgtttagtCAATGCAAATCCGGGAATAGACACTGTCCTCATGCCACCATATGAGAGAAAAAGGCTGAACACCCTTATCCCTTATTAAAGCTCTCTGTccttatcatttattattatatagttataaACTACAGGTGCTGACGTGcatctgttgttggtgtcccaggggaaatccttcAGCTGACACATCAAACTGGGCTCGCCTCAGTCAGAAGCAATGCTGAAGCcttcatcatccaggttaagtttctggaggagtttatgaactaaCAGATCTGGATGCacttctgaaaggatctagtggactccgACACGACCCTTAAcctatcgacgctgtttttcagccttcttaaagcacataaacacagttattttctcaataaaatccatgttagccatttagcaacaaagctacagtcaccgggcagacagaagccctgcccatcatgctaATCCGCATCTCTTCTGAAGggaatttgacgcgcaaatgaagcggatttgacgcgaaGGAATCGGGGTTTGAGGCGTGAATGAAGCAAGTgaactcaaatgttcacacggCCATTTACGCGTGGGTATCACGATTTATCTGCTCGTTCCGCGTCggttgtgaacacagcataagagctACTTTTTCAGCAAAAATTAAACATGAAAaggttgtgcaaaaaaaaaaaaaaaaagagaccgGCTTGCAGAaaaattgacataaattttaaaaacagaaacataTTGTTTTCATATTAGGATGTTAGGGAGTGTTACCCCAATAATAAGGTGAGATGTATATGTGGGGGTTTGTTTTATGGAAATACACTTAGTATGGTAAATCAAACCCcccagactgcatgattttcaggCTGATTTTCAGAGTTTAGATTGCATGaatttcaaagtagtcgtgtcacagatgttttcacactgcatgactatctgggtagCGTTCTGTCAGTGCcgtgtttacactgtaggattGATCGGCGGCAGGAGAGTTCACACTgcttgactttaaaataggaagaatcagCCAACAACCAAACAACGAATGCAAgcagtgacatggaaacaacgcgaGGTCATGTAATATATCTttcgttattaactacataatggaaAAAGAAGGCTTTAGCTTTAGAAACGTGTGTTGCTCACCTGGTTTTTGAAGAGAATTAATAATCTCTCCTCAACTGCTTTTTTACTTTTCGACCTGATTGTGATATtgatcagatgacacgtcaaTCAGAcacagtgctcctgccaaatttacattagtttttcctcaatttcttgggtccaaataaactgaaaatgagcacttttaacttctcccccagcctcccgctggcctgcaggtacctaTACTAGTGTAGAGGTCTgcaaatttccgaataaatcgcgagagcggtcggtaacaggtttgatttgggacgggagcaggctgtctagcaatatcgcggatattgctatgcgaatgagagagcgagagagagagagctttcccagatagcaaaatacactcgggccagttccggctagattctcgcctgccggagacttaccactcggcccggctccggctgccggactcaatcggaatcaatcgggccagatgcggcggccgtccacgccggaatcggcccgagagtaatgtgcgctgcggcccggagctggcgcgactcagtatttatataactttatataaaaccttttggtattacattggtacttgatacatggtattacaaccctttcagttgatataacagcaaacgcctgtgtgtgtgcttggtgctgtgtgtgtgtgtttatacagacagcttggctgtctggactgtatagctgggtgattttcggttttgttctcccccgctctttagcaggatcgggcgcggcggccagaaaacggggcgggtcgggcagcgggacaacaaattcttaatataagggggagcggtcgggttcgggctaaaacctggcgggtgcgggcgggagcgggattcaaaatgtagtcccgcgcagatctctatactagtgaatgctgccctctcattggctgtaggtgatcgcggatgttatttttaatcagaactcatttcacacggcatgattgaATCGCCAaaagctccagatattcagcatgccaaatatctcatgggTGTCTGctactcatcggcgattctctcatatCGTGTCCTTGATAGCTCATATAGTGTGATTGTTACTCGtgtgaacgagcaccgatttgcctgagatttcaggcatttgcgggtgatttctcaaaacctttcagtgagtcaaaatcagggctaaaatcatgcagtctgaactggAGTCTCCATCTGTCTAATTAGGGTATTAGGAAGGGAACCAGCACTtacaataataattccttacatttatatagcgcacaATGGAGGGGAATGGaggagaatctcctcatccaccaacagtgtgcagcatccacctggatgacgcgatggcagccattttgcgccagaccgcacaccacacaccggTTGACTGGTGGAgagactatatatacacatatagagactatatatacacatcacATATACATACAATGCATATGCACTGGCTTGTGGCTTCTCTTTGGAGTATTCTTACTAACAGAGATACGAAAATAAAATACATCTCACAGTACTAGtagcagtttttcttttttccagaCAATTCCTTCCCCCAGCTCAATTACACGTTTAAAACTCCTTCTAAACTTGCATAAGACATGTGGCAGGTGGTCTGTGGGCTGGCAGAGAAGCCTATATTGTCTTCTGATGCAGAATAATAGGAATAGTTTGGACAATTGAAGTTgtgatgtttctttttttaaacaatgatcAATGAAGCATTTGTGCATTAGATAAATATGCCAAATTAATTAAAGCGAAGCAAGTAGGAGTCTGTCTCACTGTGTTAAATATGGCAGGATCTTTTCTTTCATTGCAGCCTATATTTAGATGTAGAATAGCTTGCGTTTAATAGATTGCAGTTATCTTCTTTCTATTCAGATATTACAAAAGCTATCCAAGCCTGCATACAGGTATAGCACTATTATAACACATGAATATTGTCTTCCTGTCAATGTGAATGAGGCAAGTTTACTACAAAAGGAGGATTTAAACCAGGGGTTcgcaaacttttcagcctgcaacccccaaaatgacaatgcaagTGATtcacgacccccaatatcctctgaggtggttataaatacagaaacattGCATGATATTCTTTGTTTAAGTTTTTAATGtatatcagtgctgtaaatgagccagaaagtttaacctggtgttataaaaatcAATCTGCTAAATCGTATGCTATTTCTGTGTCtttaataatatgtatttacCTCAGAGGttacaatccaatagaactagttaCTATAGTAAGTTACTATAGtaagtatatagtatatagtaactattttattactattttattttattagtattttatttattaatttttttccccttcagtgggttatggataaaatatggtaattcttatggtttaataaaaataaatagatttttggaaatcaccaggcgaccccccttcattgtccagACCCCCACTTTGTGAACCACTTATTTAAACTGTACTAAAaacttttaaaaggttttaaaatgcatttaatgtcATTGAAATTTACCTGAAAACAATCCTTTGGGGAATTTCGGATTCTGTGATGCaagttttcaaaaataaaaatgtgatttgGGTCacacagcttgttataggctgtctggactctgtatagctgggtggttttcggtgtTGTTCTCCCCCGCTCGTTAGCGGGAACGGGCGCGGagggtagaaaacggggcaggTCAGGCAgcggacaacaaatgctgaatataagcgggagcggttggGTTCGGTTGATGGTctctttgttaaatttaagttacattgcatctacatgcaaactcATTCTCGTTAGATTAAGTGGACAGtcaggttgggtttagagttagtgtaagggcgtactcacacaatCCTATTTGAGAtctgtgagtgctctgaatcaggctcaggcacggtaCACTTGGCCGGCTCTggtccggttggaagaggtgtgccagagcgcagttcacttgggctttggcgcggtacgcttgtgtttgagtgcaaaatgcgcctgagcatgaaactgaaagcgagacgtgacttttaagtaaCTGTTTCATGTGGGTTTATCAATCATTATTACGGTTccgtgaacgcaaactgccgtagtttattatagacgcaaacccctcacagcaagaaagctgCACTTTCAACAAATTTCCAAATTTCTGTAGCAccagggctttatgattgtttatgagcgtcaaaagtggttgatctgtttggcgaaatgtTTTGACTGCGTGTctctgcatatcaaacgactaaaacgatataacaaaAGAAATCTACACTGTGCTGAGTGAAAGCACTTTTGTACTGAACAGTGCAtaatcgatgacgtaagcataggaaatgggaggggggacaagcatgctttggccctggttcaaggcaactgtacatagtgttaaatactattctacagttgtgcctccaattaactcaaatgctgtcaattagccaatcagaaacttacaaaaccttgacaccatcatctgagctttttcagaggcatgataatcttattgtatgtaaacttgaccttCAAGGTAAGTCACATTTCTCAAataatatctc

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000010729

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004726 True 5800 mRNA 0.42 7 4367430 4375190

Neighbor

gene id symbol gene type direction distance location
XLOC_002535 grin3a coding downstream 51415 4279521 ~ 4316015 (-)
XLOC_002534 NA coding downstream 268247 4095871 ~ 4099183 (-)
XLOC_002532 NA coding downstream 321113 4032478 ~ 4046317 (-)
XLOC_002533 NA coding downstream 326925 4038226 ~ 4040505 (-)
XLOC_002531 NA coding downstream 410581 3954090 ~ 3956849 (-)
XLOC_002537 NA coding upstream 133199 4508389 ~ 4577852 (-)
XLOC_002538 NA coding upstream 198364 4573554 ~ 4583020 (-)
XLOC_002539 NA coding upstream 437114 4812304 ~ 4818606 (-)
XLOC_002540 NA coding upstream 544133 4919323 ~ 4922051 (-)
XLOC_002541 snx30 coding upstream 565577 4940767 ~ 4961929 (-)
XLOC_002530 FP236598.1 non-coding downstream 598664 3768651 ~ 3768766 (-)
XLOC_002546 NA non-coding upstream 846725 5221915 ~ 5223942 (-)

Expression


Co-expression Network