XLOC_025361 (mfsd6l)


Basic Information

Item Value
gene id XLOC_025361
gene name mfsd6l
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 25849560 ~ 25852579 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050037
ATCATGTGCACTGGTCTGAGCGGACGTCGGCCATTGGGTGTTTGTCAAAAGAGAAAGAAAACTAGTTTCACCTCACCTGGATACAGCATGAACATGAGAACCTAAAGAAAACTTCAATCAACTGTTTTTTGTCGAACAAATCATGATTTTACGGATTCTGCAGATCTCAGGCAGCACCAAGTGAATACAAAGGTGCATGAATGTGGCAGTCATTCAGTATCAAGACCGCTAACTCAAGTTGACAATCACGATGAAGAAGGGGGCGATGCAGAAGAGCAAGCAGTGGAACGTGAAGGGAGCCGTGCGGCTGGCAAGTGTCTTTCACTTCCTCCATTCATGTGGCTCCGGGTGCCTCCTTCCCTTCCTGACCCTCTACTTCCGGCATCTGGGTCTCAGCGCTGCCATGATTGGAATCATCATGGCGTCCAAGCACTTGCTGGCCTTGTTGTGGCGCCCGTTCTCCAGTGTTCTTGCCAGGCAGTACGACAAACGGCGTACGGTCATAGTGGGCTCCTTGCTCAGCTCGGCACTGGTGGTTTTGCCTCTTCTGTTGTTCCCATCTGCAGGGATCCTGGTCGAAAGTGGACGGTGTAACACCAGTCAACCTGATGCTGATCCTACCTTACCACTCGCCGTCATAGAGCAAATGACAGTCCCAGTAGGCTCAAATGCAACTGTGTACTCAGTAAACCAAACATCTGTAAGCACCAATCAAACTCTGGAGGATAACACACTTGTAAACCACAGCAGGTCAGCAAGAGGCTTGAGATCTTTAAAGAAGGAAGAAGAACCTCACAGTGAGTTCCTGGGGAGCCTGAAAGTTATGGATGCCCAGCATCAGATGTTCTTTCTGGTGCTCCTTGTGACTGCTTTGTGGGAGTTTGTGGCCGTCCCGCTGGAATGGACGGCGGATGACGGACTCTATGAATACTTGGATTTTGTAGACGCCACTGACCGGCATAGTGGTGTGAAGGTCTGGAAGCATGTTGGGGCTGCTTTTGGCAGCTGTCTTGTAGGTGTTCTTGTAACCAACCTGTTCTGCCGGATTGGAAATTCGGTGGAGTTTTATTCATACACAGTACTTATGATCCTAACTGTACCAGCATCTGCCCTGCTACCAATCTATCTCCGAAAGCGTGAGCGCCCCACTAGTGGTGGCTTTAAGGCACTGCAGTTGGTGCATGGGAATCCACAAGCGATACTTTGTGCAGTCACTGTTATTTTGACAGGCATGGTGACCTCTGCTGTGTCAGATTTTCTCTTATGGCTGATGCAGGACTGCGGTGCCATGGAAATCCACATGGGAATATGTTTAGCATTGGCGCACTTAAGCCACACTGGCTTTTCACCGATTGCTGGGCCTCTATCCCGATTTCTAAAGTACCACGGTTGGATGTTAGTATTGGCTGTTGTTGGTTTAGCCATGCAGTGCCTTTATTATTCCTTCTTATGGAGCCCTTGGGCTGTAATGCCAGCTCAACTGTTGGCAGGCTTCAGCACCGGCGCCCTCTGGTGGTCTGTAACATCACAAAGTGAAGATATTGCCACTCCAGGCACCGAAAAGACAATTTTAAGGCTTTTTGAGGCCTTTTCTTTAGACATGGGAGCTGCATTGGGCAGTCTGATAGCAGGGTTTGTGgtgcaaaagtttggggtcaatgTGCTTTTTCAAGGCGCATCGGTCATGCTGGCTGTGTGGAGTAGCGCTCTCGCTGTGCTGAAGTGGAAGATCCCTCGACAGCGCAGAATAAACTACTCACGACTGCTGGCTGCTGACACTGAAGTGAGCGAGTCGGAGTCTGACCAGGAGAAAGACTGGCTGGAGACGGCAATGGAAGATGATAGAAGGAATAACAAGTGGACAGTAAATAAGTCTTAATAGAAATGAAGAGTGGCTGGTTAACTGCTTTAGAAGGCAAATTAAAGCTAAAAGAGAAA

Function

symbol description
mfsd6l Predicted to be integral component of membrane. Predicted to be active in membrane. Orthologous to human MFSD6L (major facilitator superfamily domain containing 6 like).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040801-105 Predicted to be integral component of membrane. Predicted to be active in membrane. Orthologous to human MFSD6L (major facilitator superfamily domain containing 6 like).

Ensembl:

ensembl_id ENSDARG00000014761

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050037 True 1938 mRNA 0.49 3 25849560 25852579

Neighbor

gene id symbol gene type direction distance location
XLOC_025359 pik3r6b coding upstream 2598 25825043 ~ 25846962 (+)
XLOC_025360 FP101990.1 coding upstream 4232 25844151 ~ 25845328 (+)
XLOC_025358 BX120006.1 coding upstream 96011 25752221 ~ 25753549 (+)
XLOC_025357 BX120006.2 coding upstream 102642 25745636 ~ 25746918 (+)
XLOC_025356 NA coding upstream 129346 25700591 ~ 25720214 (+)
XLOC_025362 zgc:171844 coding downstream 4429 25857008 ~ 25894124 (+)
XLOC_025363 tom1 coding downstream 54687 25907266 ~ 25939259 (+)
XLOC_025364 NA coding downstream 132760 25985339 ~ 25986944 (+)
XLOC_025365 gcat coding downstream 137473 25990052 ~ 25998243 (+)
XLOC_025366 mcm5 coding downstream 146898 25999477 ~ 26011440 (+)
XLOC_025429 BX649540.1 misc downstream 4396160 30248739 ~ 30249036 (+)
XLOC_025355 NA non-coding upstream 201185 25645231 ~ 25648375 (+)
XLOC_025371 NA non-coding downstream 223915 26076494 ~ 26080400 (+)
XLOC_025374 FP016144.1 non-coding downstream 341765 26194344 ~ 26194459 (+)
XLOC_025382 NA non-coding downstream 502715 26355294 ~ 26361798 (+)
XLOC_025383 NA non-coding downstream 558654 26411233 ~ 26416784 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000034_00097095_00098729 MFSD6L coding CI01000034 null 97026 ~ 99123 (-)