XLOC_025363 (tom1)


Basic Information

Item Value
gene id XLOC_025363
gene name tom1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 25907266 ~ 25939259 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050041
gtccctttaagagatgATGTAATCGCGGTTAAGTTTGTTGGTTTTAGCTCTCCAGCTGATCAGCCCGAAGCCGAAACGCGGAGCCGAAGAGACACTCGGAGGATGGAGTTTTTCACAGGAAACCCCTTCTCTACTCCTGTGGGTCAACTTATAGAGCATGCCACCAGTTCTTCCCTCCCGTCAGAGGACTGGGGCCTCAACATGGAGATCTGTGACCTTGTCAATGAAGCACAAGAAGGACCTAAAGATGCAGTCAGAGCAATAAAGAAGAGGATTCTCGGAAACAGGAATTTCAAAGAGGTCATGCTGGCTTTGAGTGTTTTGGAAGCCTGTGTGAAGAACTGCGGACACAAATTTCACGTGTATGTGTCCACCAGAGACTTTGTGGAGAATGTATTGGTCCAAACCATCCTGCCAAAAAACAACGCACCAGTGGTTCTCCAAGACAGAGTCTTGATCATGATACAGGCATGGGCCGATGCCTTTCGCAGCTCTACGGATCTGACGGGTGTCGTGACTGTATATGAGGATCTCAGAAGAAGAGGAGTGGAGTTTCCCATGACCGAACTGAATGGATATTCCCCTATTCACACTCCCAAGAGGTCTGTTGAAAATGTGTCTCCGGTAAAGGCTCACACGGAAAGTCACCCTGTCACATCCTCACAACCACAGAATACAGAGACGCCTGTCACATTGTCTCCTAAACAgatgAAGACGATAAAGGCTGAACTAGAGGTGGTGCGGAATAATCTCTCAGTGATGTCAGACATGATGAATCAGATGGAGCCTGCGACTTTTGAGCCGTCCGACACAGAGCTGCTACAGCAGCTCTACTCCATGACTAAGGACATGCAGAGCCGGATGGTGGAGGTCATTCCCACACTGACCGATGAGAAACTCACAGAACAGTTACTCAACGCCAATGATGACATCAACACCACGTTCACACAGTATCACAGATTCGAGAAACATCTGAGCAGACAGAGCAGTGCACAGCCTAATGCACCCAGCACAAACCTCACAGACTTGGATTCTCCCAAACAGTTAAAGGCAGCAAATGGTGCTCATCAATCAGCAGTCACCACACTCTCCAATCAGATGTCAGGATTGAGCACAAAAGAAGATGACCTAAATTTTAAAAGCAGCTCATTACTAAAAAGtccGGAACGCTCTGCAGCTCTGGCCACACCTGGACGAGACACTGGACTGATTCCTGTCAATCAGAGTGAAGTGATGGATGACATTGAACAGTGGCTGGATGATGTGGATGATGAGGATGACTCTGAGGGAGTGACTAGTGAAGAGTTTGACAAGTTCTTGGCAGAAAGGGCGAAAGCAGCCGAACGTCTTCCTTCAGTAAAAGCATCACATCACGATTCCGGCCGTTCACAACTGTAGTTGCTCATCTGCACAAACATGTTCAGAACTGTTTGTATTTCAGTTAACAACCATGCTCAAAGTATTTTCGGCCCATTTTTAACCATGTGCTCATTGAGTTCTGTAAATGTAAACTATAGGTTATTTGAGAAGTCTGATATCAGAGTCCTTTTGATTGCAGATGTGTCAtcttatgaaatatttttataactaGACACTAATTTCTTCTTTACTGACATTTTGGTTGTATGGTCATTTTCTTTAATCTTGAGAGTGGTGGCGCATGAAAAACATTATTGATCTTTTTTGAAAGATCTTGATGGTTGAGGTACTGTATATGGAAGCCTGTTTACAAAACGGTAATCACAACTTTAACGCacaatttataattgttttttttaactctgaGAAAATAAGTCAGAATTGCAAAAGATAAACAGAATTGTGAGATTTAAGCTAATTTTTATCTCacatttcatttcaattcatgtgtcataattctgacttttttagaACCGCAAGATTCTTTATAAAAGGAGTTTAACTTGGGGAGAAAAAGCAGTATTGGAAATGTTTAACTTGCAAGATGTAAACTCACAACTCGAAACAGAAAAGGTCAAATTGTAAGATTAAATAACTCAAATACTACCTAATCCTTGGTGAAAACAAGCTTCCATAGTTGAtagttgtatgtatgtatgtatgtattttattcAGCTGTTTTGAAGGAAATTGATTTtataacaggaaaaaaaaaacatttgcaagatACTTTTGTTTCTTTAAAAGAATATGGTTTATGTCTGCAGGCTGCTCTATGTCTTTAGTATGTTAAATATTAGTGTTTGTAATCTGTAAAACCTTAATAAGGAGTTCATAATAAGGGgtatgataaaatataaaataaaatgaagcttATTTTGca
>TCONS_00050040
gtccctttaagagatgATGTAATCGCGGTTAAGTTTGTTGGTTTTAGCTCTCCAGCTGATCAGCCCGAAGCCGAAACGCGGAGCCGAAGAGACACTCGGAGGATGGAGTTTTTCACAGGAAACCCCTTCTCTACTCCTGTGGGTCAACTTATAGAGCATGCCACCAGTTCTTCCCTCCCGTCAGAGGACTGGGGCCTCAACATGGAGATCTGTGACCTTGTCAATGAAGCACAAGAAGGACCTAAAGATGCAGTCAGAGCAATAAAGAAGAGGATTCTCGGAAACAGGAATTTCAAAGAGGTCATGCTGGCTTTGAGTGTTTTGGAAGCCTGTGTGAAGAACTGCGGACACAAATTTCACGTGTATGTGTCCACCAGAGACTTTGTGGAGAATGTATTGGTCCAAACCATCCTGCCAAAAAACAACGCACCAGTGGTTCTCCAAGACAGAGTCTTGATCATGATACAGGCATGGGCCGATGCCTTTCGCAGCTCTACGGATCTGACGGGTGTCGTGACTGTATATGAGGATCTCAGAAGAAGAGGAGTGGAGTTTCCCATGACCGAACTGAATGGATATTCCCCTATTCACACTCCCAAGAGGTCTGTTGAAAATGTGTCTCCGGTAAAGGCTCACACGGAAAGTCACCCTGTCACATCCTCACAACCACAGAATACAGAGACGCCTGTCACATTGTCTCCTAAACAgatgAAGACGATAAAGGCTGAACTAGAGGTGGTGCGGAATAATCTCTCAGTGATGTCAGACATGATGAATCAGATGGAGCCTGCGACTTTTGAGCCGTCCGACACAGAGCTGCTACAGCAGCTCTACTCCATGACTAAGGACATGCAGAGCCGGATGGTGGAGGTCATTCCCACACTGACCGATGAGAAACTCACAGAACAGTTACTCAACGCCAATGATGACATCAACACCACGTTCACACAGTATCACAGATTCGAGAAACATCTGAGCAGACAGAGCAGTGCACAGCCTAATGCACCCAGCACAAACCTCACAGACTTGGATTCTCCCAAACAGTTAAAGGCAGCAAATGGTGCTCATCAATCAGCAGTCACCACACTCTCCAATCAGATGTCAGGATTGAGCACAAAAGAAGATGACCTAAATTTTAAAAGCAGCTCATTACTAAAAAGtccGGAACGCTCTGCAGCTCTGGCCACACCTGGACGAGACACTGGACTGGATGAGAGTCGAGACTCCACCTCCCTCGGCAGCTCGCCTCAGTTTCTTTGGATGATTGAAAAGGGAATGATTCCTGTCAATCAGAGTGAAGTGATGGATGACATTGAACAGTGGCTGGATGATGTGGATGATGAGGATGACTCTGAGGGAGTGACTAGTGAAGAGTTTGACAAGTTCTTGGCAGAAAGGGCGAAAGCAGCCGAACGTCTTCCTTCAGTAAAAGCATCACATCACGATTCCGGCCGTTCACAACTGTAGTTGCTCATCTGCACAAACATGTTCAGAACTGTTTGTATTTCAGTTAACAACCATGCTCAAAGTATTTTCGGCCCATTTTTAACCATGTGCTCATTGAGTTCTGTAAATGTAAACTATAGGTTATTTGAGAAGTCTGATATCAGAGTCCTTTTGATTGCAGATGTGTCAtcttatgaaatatttttataactaGACACTAATTTCTTCTTTACTGACATTTTGGTTGTATGGTCATTTTCTTTAATCTTGAGAGTGGTGGCGCATGAAAAACATTATTGATCTTTTTTGAAAGATCTTGATGGTTGAGGTACTGTATATGGAAGCCTGTTTACAAAACGGTAATCACAACTTTAACGCacaatttataattgttttttttaactctgaGAAAATAAGTCAGAATTGCAAAAGATAAACAGAATTGTGAGATTTAAGCTAATTTTTATCTCacatttcatttcaattcatgtgtcataattctgacttttttagaACCGCAAGATTCTTTATAAAAGGAGTTTAACTTGGGGAGAAAAAGCAGTATTGGAAATGTTTAACTTGCAAGATGTAAACTCACAACTCGAAACAGAAAAGGTCAAATTGTAAGATTAAATAACTCAAATACTACCTAATCCTTGGTGAAAACAAGCTTCCATAGTTGAtagttgtatgtatgtatgtatgtattttattcAGCTGTTTTGAAGGAAATTGATTTtataacaggaaaaaaaaaacatttgcaagatACTTTTGTTTCTTTAAAAGAATATGGTTTATGTCTGCAGGCTGCTCTATGTCTTTAGTATGTTAAATATTAGTGTTTGTAATCTGTAAAACCTTAATAAGGAGTTCATAATAAGGGgtatgataaaatataaaataaaatgaagcttATTTTGca
>TCONS_00050042
TGGCTTTGCTGCAGGTTTTGGAAGCCTGTGTGAAGAACTGCGGACACAAATTTCACGTGTATGTGTCCACCAGAGACTTTGTGGAGAATGTATTGGTCCAAACCATCCTGCCAAAAAACAACGCACCAGTGGTTCTCCAAGACAGAGTCTTGATCATGATACAGGCATGGGCCGATGCCTTTCGCAGCTCTACGGATCTGACGGGTGTCGTGACTGTATATGAGGATCTCAGAAGAAGAGGAGTGGAGTTTCCCATGACCGAACTGAATGGATATTCCCCTATTCACACTCCCAAGAGGTCTGTTGAAAATGTGTCTCCGGTAAAGGCTCACACGGAAAGTCACCCTGTCACATCCTCACAACCACAGAATACAGAGACGCCTGTCACATTGTCTCCTAAACAgatgAAGACGATAAAGGCTGAACTAGAGGTGGTGCGGAATAATCTCTCAGTGATGTCAGACATGATGAATCAGATGGAGCCTGCGACTTTTGAGCCGTCCGACACAGAGCTGCTACAGCAGCTCTACTCCATGACTAAGGACATGCAGAGCCGGATGGTGGAGGTCATTCCCACACTGACCGATGAGAAACTCACAGAACAGTTACTCAACGCCAATGATGACATCAACACCACGTTCACACAGTATCACAGATTCGAGAAACATCTGAGCAGACAGAGCAGTGCACAGCCTAATGCACCCAGCACAAACCTCACAGACTTGGATTCTCCCAAACAGTTAAAGGCAGCAAATGGTGCTCATCAATCAGCAGTCACCACACTCTCCAATCAGATGTCAGGATTGAGCACAAAAGAAGATGACCTAAATTTTAAAAGCAGCTCATTACTAAAAAGtccGGAACGCTCTGCAGCTCTGGCCACACCTGGACGAGACACTGGACTGGATGAGAGTCGAGACTCCACCTCCCTCGGCAGCTCGCCTCAGTTTCTTTGGATGATTGAAAAGGGAATGATTCCTGTCAATCAGAGTGAAGTGATGGATGACATTGAACAGTGGCTGGATGATGTGGATGATGAGGATGACTCTGAGGGAGTGACTAGTGAAGAGTTTGACAAGTTCTTGGCAGAAAGGGCGAAAGCAGCCGAACGTCTTCCTTCAGTAAAAGCATCACATCACGATTCCGGCCGTTCACAACTGTAGTTGCTCATCTGCACAAACATGTTCAGAACTGTTTGTATTTCAGTTAACAACCATGCTCAAAGTATTTTCGGCCCATTTTTAACCATGTGCTCATTGAGTTCTGTAAATGTAAACTATAGGTTATTTGAGAAGTCTGATATCAGAGTCCTTTTGATTGCAGATGTGTCAtcttatgaaatatttttataactaGACACTAATTTCTTCTTTACTGACATTTTGGTTGTATGGTCATTTTCTTTAATCTTGAGAGTGGTGGCGCATGAAAAACATTATTGATCTTTTTTGAAAGATCTTGATGGTTGAGGTACTGTATATGGAAGCCTGTTTACAAAACGGTAATCACAACTTTAACGCacaatttataattgttttttttaactctgaGAAAATAAGTCAGAATTGCAAAAGATAAACAGAATTGTGAGATTTAAGCTAATTTTTATCTCacatttcatttcaattcatgtgtcataattctgacttttttagaACCGCAAGATTCTTTATAAAAGGAGTTTAACTTGGGGAGAAAAAGCAGTATTGGAAATGTTTAACTTGCAAGATGTAAACTCACAACTCGAAACAGAAAAGGTCAAATTGTAAGATTAAATAACTCAAATACTACCTAATCCTTGGTGAAAACAAGCTTCCATAGTTGAtagttgtatgtatgtatgtatgtattttattcAGCTGTTTTGAAGGAAATTGATTTtataacaggaaaaaaaaaacatttgcaagatACTTTTGTTTCTTTAAAAGAATATGGTTTATGTCTGCAGGCTGCTCTATGTCTTTAGTATGTTAAATATTAGTGTTTGTAATCTGTAAAACCTTAATAAGGAGTTCATAATAAGGGgtatgataaaatataaaataaaatgaagcttATTTTGca
>TCONS_00050043
GGTTTTGGAAGCCTGTGTGAAGAACTGCGGACACAAATTTCACGTGTATGTGTCCACCAGAGACTTTGTGGAGAATGTATTGGTCCAAACCATCCTGCCAAAAAACAACGCACCAGTGGTTCTCCAAGACAGAGTCTTGATCATGATACAGGCATGGGCCGATGCCTTTCGCAGCTCTACGGATCTGACGGGTGTCGTGACTGTATATGAGGATCTCAGAAGAAGAGGAGTGGAGTTTCCCATGACCGAACTGAATGGATATTCCCCTATTCACACTCCCAAGAGGTCTGTTGAAAATGTGTCTCCGGTAAAGGCTCACACGGAAAGTCACCCTGTCACATCCTCACAACCACAGAATACAGAGACGCCTGTCACATTGTCTCCTAAACAgatgAAGACGATAAAGGCTGAACTAGAGGTGGTGCGGAATAATCTCTCAGTGATGTCAGACATGATGAATCAGATGGAGCCTGCGACTTTTGAGCCGTCCGACACAGAGCTGCTACAGCAGCTCTACTCCATGACTAAGGACATGCAGAGCCGGATGGTGGAGGTCATTCCCACACTGACCGATGAGAAACTCACAGAACAGTTACTCAACGCCAATGATGACATCAACACCACGTTCACACAGTATCACAGATTCGAGAAACATCTGAGCAGACAGAGCAGTGCACAGCCTAATGCACCCAGCACAAACCTCACAGACTTGGATTCTCCCAAACAGTTAAAGGCAGCAAATGGTGCTCATCAATCAGCAGTCACCACACTCTCCAATCAGATGTCAGGATTGAGCACAAAAGAAGATGACCTAAATTTTAAAAGCAGCTCATTACTAAAAAGtccGGAACGCTCTGCAGCTCTGGCCACACCTGGACGAGACACTGGACTGATTCCTGTCAATCAGAGTGAAGTGATGGATGACATTGAACAGTGGCTGGATGATGTGGATGATGAGGATGACTCTGAGGGAGTGACTAGTGAAGAGTTTGACAAGTTCTTGGCAGAAAGGGCGAAAGCAGCCGAACGTCTTCCTTCAGTAAAAGCATCACATCACGATTCCGGCCGTTCACAACTGTAGTTGCTCATCTGCACAAACATGTTCAGAACTGTTTGTATTTCAGTTAACAACCATGCTCAAAGTATTTTCGGCCCATTTTTAACCATGTGCTCATTGAGTTCTGTAAATGTAAACTATAGGTTATTTGAGAAGTCTGATATCAGAGTCCTTTTGATTGCAGATGTGTCAtcttatgaaatatttttataactaGACACTAATTTCTTCTTTACTGACATTTTGGTTGTATGGTCATTTTCTTTAATCTTGAGAGTGGTGGCGCATGAAAAACATTATTGATCTTTTTTGAAAGATCTTGATGGTTGAGGTACTGTATATGGAAGCCTGTTTACAAAACGGTAATCACAACTTTAACGCacaatttataattgttttttttaactctgaGAAAATAAGTCAGAATTGCAAAAGATAAACAGAATTGTGAGATTTAAGCTAATTTTTATCTCacatttcatttcaattcatgtgtcataattctgacttttttagaACCGCAAGATTCTTTATAAAAGGAGTT

Function

symbol description
tom1 Predicted to enable clathrin binding activity. Predicted to be involved in signal transduction. Predicted to act upstream of or within intracellular protein transport. Predicted to be active in endosome and membrane. Orthologous to human TOM1 (target of myb1 membrane trafficking protein).

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0015031 protein transport biological_process
GO:0007165 signal transduction biological_process
GO:0005768 endosome cellular_component
GO:0016020 membrane cellular_component
GO:0030276 clathrin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060721-1 Predicted to enable clathrin binding activity. Predicted to be involved in signal transduction. Predicted to act upstream of or within intracellular protein transport. Predicted to be active in endosome and membrane. Orthologous to human TOM1 (target of myb1 membrane trafficking protein).

Ensembl:

ensembl_id ENSDARG00000104581

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050041 False 2302 mRNA 0.41 15 25907266 25939259
TCONS_00050040 False 2371 mRNA 0.41 16 25907266 25939259
TCONS_00050042 False 2067 mRNA 0.40 13 25914064 25939259
TCONS_00050043 True 1601 mRNA 0.42 12 25914077 25938875

Neighbor

gene id symbol gene type direction distance location
XLOC_025362 zgc:171844 coding upstream 13142 25857008 ~ 25894124 (+)
XLOC_025361 mfsd6l coding upstream 54687 25849560 ~ 25852579 (+)
XLOC_025359 pik3r6b coding upstream 60304 25825043 ~ 25846962 (+)
XLOC_025360 FP101990.1 coding upstream 61938 25844151 ~ 25845328 (+)
XLOC_025358 BX120006.1 coding upstream 153717 25752221 ~ 25753549 (+)
XLOC_025364 NA coding downstream 46080 25985339 ~ 25986944 (+)
XLOC_025365 gcat coding downstream 50793 25990052 ~ 25998243 (+)
XLOC_025366 mcm5 coding downstream 60218 25999477 ~ 26011440 (+)
XLOC_025367 foxred2 coding downstream 80167 26019426 ~ 26032712 (+)
XLOC_025368 ankrd54 coding downstream 96291 26035550 ~ 26044759 (+)
XLOC_025429 BX649540.1 misc downstream 4309480 30248739 ~ 30249036 (+)
XLOC_025357 BX120006.2 non-coding upstream 160348 25745636 ~ 25746918 (+)
XLOC_025356 NA non-coding upstream 187052 25700591 ~ 25720214 (+)
XLOC_025355 NA non-coding upstream 258891 25645231 ~ 25648375 (+)
XLOC_025371 NA non-coding downstream 137235 26076494 ~ 26080400 (+)
XLOC_025374 FP016144.1 non-coding downstream 255085 26194344 ~ 26194459 (+)
XLOC_025382 NA non-coding downstream 416035 26355294 ~ 26361798 (+)
XLOC_025383 NA non-coding downstream 471974 26411233 ~ 26416784 (+)

Expression


Co-expression Network