XLOC_025365 (gcat)


Basic Information

Item Value
gene id XLOC_025365
gene name gcat
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 25990052 ~ 25998243 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050044
gattggctgatttgtcAACGCCTATGTAAGTTACTTATATACGTGTCAGCCTTGCTTTCTAGTCTAATACTTTTACGGTATCGCCTACTGTCAGAAATGTCACTTCGCACAGCTGCATGGGGTTTCGGTGCTCGCCTGAGGGGTGTTTTACAGCCCAGCACGGCCGCTGTTGCTGCCAGAAGAGCGTTCGCGCCTGCGGCTCCTCAGGCTGTGCAGTCCGTGCTGGAGGCCGAGCTGGACTCTATCCGCGCCGCGGGCACATGGAAGGGGGAGCGGGTCATCACTTCCAAACAGGGTCCTCATATCTGCGTAGACGGCAGCAGAGGCGaCATATTAAATTTTTGTGCAAATAACTACTTGGGTTTATCCAGTCATCCCGAGGTGGTGAAAGCAGGAGTAGAGGCTCTGCAGAAATATGGTGCTGGCCTTAGTTCAGTTCGCTTCATCTGCGGCACCCAGGACATCCACAAGAACTTGGAGGAGAAACTAGCGCAGTTTCATGAAAGGGAAGACTGTATTCTATATGCAAGCTGCTTCGATGCCAATGCTGGCCTGTTTGAGGTCCTGTTGGGTCCTGATGATGCTGTTTTGTCTGATGAACTGAATCATGCCTCCATTATCGATGGCATTCGATTGTGTCGTGCCAAGAGGTTCCGGTACAAGCACATGGACCTGAATGACCTGGAAGAAAAGCTGAAAGAGTCACAGTCGTCCCGTCTGAGGTTGGTGGTCACAGATGGCGTGTTTTCCATGGACGGTGATGTGGCTCCTCTGAAGGGTATCTGTGATCTGGCTGAGCAGTATGGAGCGATGGTCTTCATTGATGAATGTCATGCCACAGGATTTATGGGTGCTCGTGGCCGAGGGACTGATGAGCTGCTGGGAGTGATGGACAGGGTGCAAATTGTGAATTCCACTCTGGGAAAAGCACTGGGAGGAGCTGCCGGTGGTTACACTGTTGGACCCAAGGCTTTAATTGAGCTTCTGAGACAGCGGTCTCGTCCGTACCTCTTCTCAAACTCCCTCCCGCCTCCAGTGGTGGGCTGTGCCACCCGTGCTGTGGAGCTCCTGCTGGCATCCAATGAAATCGCTCAGTCCATGGCAGCTAAAACCATGAGGTTCAGAAACAACATGACCCAGGCAGGGTTCACCATCTCTGGCTCAGCTCACCCCATCTGCCCTGTGATGCTGGGAGATGCTCGCCTCGCTTCACTTATGGCAGATGACATGCTTAAACTGGGAGTGTATGTGATCGGTTTCTCCTACCCCGTTGTTCCCAAAGGAAAAGCCCGCATTCGTGTCCAAATCTCTGCAGCTCACACTGATGAGGACATTGACCGAACTGTAGACGCCTTCATACAGACCGGCAGAAAGCACGGTGTCATTTCCTAAAGTCAGAAACACATTCTAAAGGTGTTGACTGTTAGAGTGAGGATTGCGTTACATATCATATAACAAAAAGCTTCTTTAGCTACTGAGATCAAAGAAGGTCAaagaatatttgtatattttcgatattgacaataaataaatgcttttctctATGATTGCCAATAGCTTTTTTACAGCAGCTataaaccaaaagtgtcttgacTTTTTTCAGTTGAGACATGTTGCATTTGCATTGCTAGAAAATTTGTACAGATCATGCGTATTGCTGCAACTGTTTATAGATGActtagaaaaattaaataaaaagatgatGACATTTAATGTCTTTAA

Function

symbol description
gcat Predicted to enable glycine C-acetyltransferase activity and pyridoxal phosphate binding activity. Predicted to act upstream of or within biosynthetic process and threonine catabolic process. Predicted to be active in mitochondrion. Orthologous to human GCAT (glycine C-acetyltransferase).

GO:

id name namespace
GO:0009058 biosynthetic process biological_process
GO:0006567 threonine catabolic process biological_process
GO:0005739 mitochondrion cellular_component
GO:0016740 transferase activity molecular_function
GO:0030170 pyridoxal phosphate binding molecular_function
GO:0008890 glycine C-acetyltransferase activity molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
ko00260 Glycine, serine and threonine metabolism
ko01007 Amino acid related enzymes

ZFIN:

id description
ZDB-GENE-060518-3 Predicted to enable glycine C-acetyltransferase activity and pyridoxal phosphate binding activity. Predicted to act upstream of or within biosynthetic process and threonine catabolic process. Predicted to be active in mitochondrion. Orthologous to human GCAT (glycine C-acetyltransferase).

Ensembl:

ensembl_id ENSDARG00000005643

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050044 True 1722 mRNA 0.48 9 25990052 25998243

Neighbor

gene id symbol gene type direction distance location
XLOC_025364 NA coding upstream 3108 25985339 ~ 25986944 (+)
XLOC_025363 tom1 coding upstream 50793 25907266 ~ 25939259 (+)
XLOC_025362 zgc:171844 coding upstream 95928 25857008 ~ 25894124 (+)
XLOC_025361 mfsd6l coding upstream 137473 25849560 ~ 25852579 (+)
XLOC_025359 pik3r6b coding upstream 143090 25825043 ~ 25846962 (+)
XLOC_025366 mcm5 coding downstream 1234 25999477 ~ 26011440 (+)
XLOC_025367 foxred2 coding downstream 21183 26019426 ~ 26032712 (+)
XLOC_025368 ankrd54 coding downstream 37307 26035550 ~ 26044759 (+)
XLOC_025369 hmgxb4a coding downstream 46726 26044969 ~ 26060047 (+)
XLOC_025370 si:dkeyp-69e1.8 coding downstream 65848 26064091 ~ 26070801 (+)
XLOC_025429 BX649540.1 misc downstream 4250496 30248739 ~ 30249036 (+)
XLOC_025360 FP101990.1 non-coding upstream 144724 25844151 ~ 25845328 (+)
XLOC_025358 BX120006.1 non-coding upstream 236503 25752221 ~ 25753549 (+)
XLOC_025357 BX120006.2 non-coding upstream 243134 25745636 ~ 25746918 (+)
XLOC_025356 NA non-coding upstream 269838 25700591 ~ 25720214 (+)
XLOC_025371 NA non-coding downstream 78251 26076494 ~ 26080400 (+)
XLOC_025374 FP016144.1 non-coding downstream 196101 26194344 ~ 26194459 (+)
XLOC_025382 NA non-coding downstream 357051 26355294 ~ 26361798 (+)
XLOC_025383 NA non-coding downstream 412990 26411233 ~ 26416784 (+)
XLOC_025384 NA non-coding downstream 637577 26635820 ~ 26636398 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000034_04222777_04228601 GCAT coding CI01000034 null 4222597 ~ 4228745 (+)