G607472 (LOC100136012)


Basic Information

Item Value
gene id G607472
gene name LOC100136012
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 40991118 ~ 40991426 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU691701
gtgtgttactaatggttttctttgagactgtggtcccagctgtcttcaggtcattgaccaggtcctgccgtgtagttctgggctgatccctcaccttcctcatgatcattgatgccccacgaggtgagatcttgcatggagccccagaccgattgacagtcatcttgaacttcttccattttctaataattgcgccaacagttgttgccttctcaccaagctgcttgcctattgtcctgttgcccatcccagccttgtgcaggtctacaattttatccctgatgtccttacacagctctctggtcttgg

Function

NR:

description
Transposable element Tcb1 transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU691701 True 309 lncRNA 0.49 1 40991118 40991426

Neighbor

gene id symbol gene type direction distance location
si:ch211-105j21.9 LOC106582731 coding upstream 207901 40778742 ~ 40783217 (+)
LOC110527761 LOC106582730 coding upstream 213047 40768279 ~ 40778071 (+)
tspan2a LOC106582727 coding upstream 257534 40715927 ~ 40733584 (+)
ngfb LOC106582728 coding upstream 283269 40683006 ~ 40707849 (+)
LOC110527753 NA coding upstream 484665 40493653 ~ 40506453 (+)
ppm1j LOC106582733 coding downstream 369763 41361189 ~ 41411312 (+)
rhoca rhoc coding downstream 422977 41414403 ~ 41439948 (+)
st7l LOC106582738 coding downstream 494262 41485688 ~ 41503766 (+)
LOC118965381 NA coding downstream 526359 41517785 ~ 41519333 (+)
LOC118965355 LOC106582742 coding downstream 624158 41615584 ~ 41616729 (+)
G607454 NA non-coding upstream 10013 40980769 ~ 40981105 (+)
G607386 NA non-coding upstream 57775 40933136 ~ 40933343 (+)
G607302 NA non-coding upstream 119614 40871113 ~ 40871504 (+)
G607301 NA non-coding upstream 121117 40869688 ~ 40870001 (+)
G607264 NA non-coding upstream 144013 40846854 ~ 40847105 (+)
G607506 NA non-coding downstream 27902 41019328 ~ 41019687 (+)
G607509 NA non-coding downstream 29201 41020627 ~ 41020885 (+)
G607519 NA non-coding downstream 39875 41031301 ~ 41031693 (+)
G607534 NA non-coding downstream 49199 41040625 ~ 41040955 (+)
G607540 NA non-coding downstream 54200 41045626 ~ 41045826 (+)
G606977 NA other upstream 356679 40634181 ~ 40634439 (+)
LOC110527751 NA other upstream 550486 40438879 ~ 40457742 (+)
G606469 NA other upstream 759893 40230885 ~ 40231225 (+)
G606464 LOC106582711 other upstream 766947 40223027 ~ 40224171 (+)
G606452 LOC106582711 other upstream 784221 40206569 ~ 40206897 (+)
G607904 NA other downstream 471398 41462824 ~ 41463169 (+)
G608390 LOC106582745 other downstream 835785 41827211 ~ 41830808 (+)
G609436 NA other downstream 1829530 42820956 ~ 42821245 (+)
G610436 NA other downstream 2418965 43410391 ~ 43410806 (+)
G610563 LOC106582806 other downstream 2592594 43584020 ~ 43584896 (+)

Expression


Co-expression Network