XLOC_025370 (si:dkeyp-69e1.8)


Basic Information

Item Value
gene id XLOC_025370
gene name si:dkeyp-69e1.8
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 26064091 ~ 26070801 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050050
GGAGAAACAGGAAGTGCAGAGAAACACAGAGCAGCTCAGTAACATACGGTACTGCTCAGACCAGTCTTTCTCTTTAAGGTGCTTACTATGGAGGGAAGTAAGACTCAAGATGGAATTCGCCAACAAGAGACAGAAAAAATGCAAAGCAGTGGAAGAGGGCACACAGATACTGAGGAAAGAGAGTTGAGACTGGTGCTGCTGGGTTCAGTGGGTGCTGCGAAAAGCACTGCAGTCAATGCCATCCTGGGCAGCCCGACATCCGAGTGTGAGACGCCCGATGCTGACTGTCAGAAGAGACGTGCAACGCTGGCAGGGCGACAGGTAGCAGTGGTGGACACACCTGAGCGTCTGTGCGTAGAGCGTCCTGCTGAGGACGTCCGCCGCCAATTTTCGCTCTGTGCTGCTTTATCGGCCCCGGGGCCTCACGCTTTCCTGCTCTGTGTTCCTGTTCACCGGCACAGCAACCTGGAGCTTCAGATTCTGGAGACCATCGAAAAAGTATTCGGCCCTGAAGCTGTGAGCAAACACACAATGGTGCTCTTCACCCACATGGACCAGCTGCCAGAGGATGTTCTTCTTAGCGAGTTTCTCAGTACAGAACGAGTCGATTTATTGGAGCTCGTGCAAAAATGCGGAGAGCGAGAGCATCCTTTGAGGCCAGAGGAGAAAGACAACGTTGAGGAGCTGCTGACGAAGGTGGAACGGATGGTAAAAGAAAGCGGGACACCGTTTTACACATGCCCTCTTTTGCAGGAGGCAGAGAGAAGAGtgaaggagaaggaggaggagattTCGAGGAGTCGAGGAGAGAGTGATTCTGAGGGAACAAGAGCTGAAGCGGAGAGAAGTGTGGATGATCTCCTGGTGGAGGGAATCACAGAGCTCTGCGTCGCCAAGCCTGAGGACTTGCCATTTATGCGCTGGTTGTGGGACAGTGTGGTCGGGTGGCTTCTGTGGCTGCCGAAAATGGTGAGGGGCAGTACTCTGCTGGGCTCCATTGTGGGGCTGTTCGTCGGGGGGTCTTTAGGAGGGGCCATGGGAGCAACGGTGGGCTCTGTGGCCACAGAGGTGGAGAGAAGGAAAAAGAAATGAGCAACTAAACAGTTTGGTAACAGCTTATTGTATTTTTCATTACATTATAAAATGTTCGCCCCAATAAACAGATCAGTTATTCTTATGCATTCAATTAgctagggtaacactttacagtaaggttgcaTTAGgtgatatatttattaacatgaacaatacatttattacagtatttattcatttttgttaacattaatgaaaacacagttgtttattgttagttgtTGTTAACtcagtacattaactaatgttaactgtTAACAATAACAACTTCAATATGATTTTAGGAATCATTTTTGAATGCTGAAATTAACATTAACAATGCTTGATAAATGCTGTgcaagtattttttattcttagttcatgttagtaaatactttaAGATGAATTAatgaacctcattgtaaagtgtgg

Function

symbol description
si:dkeyp-69e1.8 Predicted to enable GTP binding activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human GIMAP1-GIMAP5 (GIMAP1-GIMAP5 readthrough).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-676 Predicted to enable GTP binding activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human GIMAP1-GIMAP5 (GIMAP1-GIMAP5 readthrough).

Ensembl:

ensembl_id ENSDARG00000055731

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050050 True 1506 mRNA 0.46 4 26064091 26070801

Neighbor

gene id symbol gene type direction distance location
XLOC_025369 hmgxb4a coding upstream 4044 26044969 ~ 26060047 (+)
XLOC_025368 ankrd54 coding upstream 19332 26035550 ~ 26044759 (+)
XLOC_025367 foxred2 coding upstream 31379 26019426 ~ 26032712 (+)
XLOC_025366 mcm5 coding upstream 52651 25999477 ~ 26011440 (+)
XLOC_025365 gcat coding upstream 65848 25990052 ~ 25998243 (+)
XLOC_025371 NA coding downstream 5693 26076494 ~ 26080400 (+)
XLOC_025372 atp2a1 coding downstream 10542 26081343 ~ 26157066 (+)
XLOC_025373 hsp70.3 coding downstream 52935 26123736 ~ 26127091 (+)
XLOC_025374 FP016144.1 coding downstream 123543 26194344 ~ 26194459 (+)
XLOC_025375 nudt9 coding downstream 152575 26223376 ~ 26232773 (+)
XLOC_025429 BX649540.1 misc downstream 4177938 30248739 ~ 30249036 (+)
XLOC_025364 NA non-coding upstream 77147 25985339 ~ 25986944 (+)
XLOC_025360 FP101990.1 non-coding upstream 218763 25844151 ~ 25845328 (+)
XLOC_025358 BX120006.1 non-coding upstream 310542 25752221 ~ 25753549 (+)
XLOC_025357 BX120006.2 non-coding upstream 317173 25745636 ~ 25746918 (+)
XLOC_025356 NA non-coding upstream 343877 25700591 ~ 25720214 (+)
XLOC_025382 NA non-coding downstream 284493 26355294 ~ 26361798 (+)
XLOC_025383 NA non-coding downstream 340432 26411233 ~ 26416784 (+)
XLOC_025384 NA non-coding downstream 565019 26635820 ~ 26636398 (+)

Expression


Co-expression Network