XLOC_025371


Basic Information

Item Value
gene id XLOC_025371
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 26076494 ~ 26080400 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052340
tttggtttttcaaagagAATCacgtggattccggtcagaaagatgcatatgaggaagctcgactcaaacatccacacgcaactgtgatttctgactggtagacagatgaggatgatgatcgcctgtcatacatctaaagacagaacagggacagtatagacacatctataccgtgatgaagaaaaattacttggaacaaagaggctggataaaagcacgactgactgaagttttaaaatcatgcaacgtcataaagcagcagctgggcctgattctcacaaaaccaaaacagacgtgatgaaattccagatgtaaacacatttgaccttcctttggccaatttgatttggaaaagcttgaaaatcaactaaaggagcagcctgaacaaatgaagaaactgatggagtgaggacaaatgtccataccacgccactgacaaagaagtggaaaaatgcattacaaggtagctacaacttgcccctgacagggatggaggaagaaagaagagaaagctaatgtgtcaaatgtctacatcactattttgttttattttttaaacaacattttaagtgtattaagatgttccctgatacttgaacaatttgtttcttcagaattctgcagtactttttacaagtttgacttggatattttacggattgtcattggtatttttaagatgtttcttgctatatcttaaattggtttctatatttaggtttatataaaatttagctgttttttacaaatttttaattcaagtctattgggaaaacagggttgttttaaaaaacatctgtgtttgtgtg

Function

GO:

id name namespace
GO:0042074 cell migration involved in gastrulation biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0048762 mesenchymal cell differentiation biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0065007 biological regulation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0060896 neural plate pattern specification biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0060897 neural plate regionalization biological_process
GO:0001756 somitogenesis biological_process
GO:0043009 chordate embryonic development biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0048785 hatching gland development biological_process
GO:0048513 animal organ development biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0048519 negative regulation of biological process biological_process
GO:0048523 negative regulation of cellular process biological_process
GO:0035295 tube development biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009888 tissue development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0060429 epithelium development biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0060485 mesenchyme development biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0050789 regulation of biological process biological_process
GO:0061053 somite development biological_process
GO:0050794 regulation of cellular process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0007417 central nervous system development biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0007420 brain development biological_process
GO:0001667 ameboidal-type cell migration biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0060322 head development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052340 True 809 lncRNA 0.36 6 26076494 26080400

Neighbor

gene id symbol gene type direction distance location
XLOC_025370 si:dkeyp-69e1.8 coding upstream 5693 26064091 ~ 26070801 (+)
XLOC_025369 hmgxb4a coding upstream 16447 26044969 ~ 26060047 (+)
XLOC_025368 ankrd54 coding upstream 31735 26035550 ~ 26044759 (+)
XLOC_025367 foxred2 coding upstream 43782 26019426 ~ 26032712 (+)
XLOC_025366 mcm5 coding upstream 65054 25999477 ~ 26011440 (+)
XLOC_025372 atp2a1 coding downstream 943 26081343 ~ 26157066 (+)
XLOC_025373 hsp70.3 coding downstream 43336 26123736 ~ 26127091 (+)
XLOC_025374 FP016144.1 coding downstream 113944 26194344 ~ 26194459 (+)
XLOC_025375 nudt9 coding downstream 142976 26223376 ~ 26232773 (+)
XLOC_025376 atad5a coding downstream 163953 26244353 ~ 26266464 (+)
XLOC_025429 BX649540.1 misc downstream 4168339 30248739 ~ 30249036 (+)
XLOC_025364 NA non-coding upstream 89550 25985339 ~ 25986944 (+)
XLOC_025360 FP101990.1 non-coding upstream 231166 25844151 ~ 25845328 (+)
XLOC_025358 BX120006.1 non-coding upstream 322945 25752221 ~ 25753549 (+)
XLOC_025357 BX120006.2 non-coding upstream 329576 25745636 ~ 25746918 (+)
XLOC_025356 NA non-coding upstream 356280 25700591 ~ 25720214 (+)
XLOC_025382 NA non-coding downstream 274894 26355294 ~ 26361798 (+)
XLOC_025383 NA non-coding downstream 330833 26411233 ~ 26416784 (+)
XLOC_025384 NA non-coding downstream 555420 26635820 ~ 26636398 (+)
XLOC_025390 NA non-coding downstream 1213908 27294308 ~ 27343689 (+)

Expression


Co-expression Network