XLOC_025372 (atp2a1)


Basic Information

Item Value
gene id XLOC_025372
gene name atp2a1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 26081343 ~ 26157066 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050051
GAAACTCTCCAAACTGAGGCGTCGCAGGATTGGTAATgtgctctattggattgagaaatggtgactgtggaggccatttgtgtaccaccaccaccagcctgaactgttcatacaaggcaagatggatccaagCTTTtatgctgttgatgccaaattctgaccctaccatccggatgtcgcagcagaaatcaagactcatcagaccagacaacatttttcttcaattttgAAAGAAATAGCATGCGGGTTTGGAACGTCAAtgcggGATCATCACACTCTTGATgaagatgacgatgatgatgatgatgaagagcgGCTCCTGTCTCTCACTGCTGGAGCTGAAAACACAGCGGGCTGCTAAGCAACTGTACTCATGCTTGGACCTTGTAAGGCCAGAGCTGCAGCAGAGCAAGAGGTGGACAGCCCTGAAGCACAGCTAAATATAACCTGCAGAGAGAGAAAGCCAGAGgcttggttagttagttagttagcgaGGGTGTTGGGCTTTCTTTGGGATCTCCTCTGCCCTCTCCTTTTTCAAGAATACCCAAGGACGACCCTCACTATTATTAAAAGCGTTCATCCCTGCATCTTGGCTTTCCAGAATGGCTCTTCTCTTACCCTTGATTCGTCTTCCTGTCATCAGCAGCGTCTCTGTATGTTCCGCAGGCCAATTGGAGACCTAAAAAGGAAGATACGTACACAATGACGGAGCTACAGAAGGATAAATATACTCATTAAATGAGGGAAGACAGGATGGAGAACGCACACACCAAGGAGACACCAGAATGCCTGGCCTACTTCGGCGTGAGCGAGTCCACAGGCCTCACACCAGAACAGGTCAAGAAGAACCAAGCCAAGTACGGATTCAACGagctgccAGCTGAAGAAGGTAAGAGCATCTGGGAGCTGGTGGTGGAGCAGTTTGAAGATCTGTTGGTCAGGATTCTGCTTTTGGCCGCCTGCATCTCTTTTGTACTGGCCTGGTTTGAGGAAGGTGAGGAAACAGTCACTGCCTTCGTCGAGCCCTTCGTTATTCTCCTCATCCT
>TCONS_00050053
GATCATCACACTCTTGATgaagatgacgatgatgatgatgatgaagagcgGCTCCTGTCTCTCACTGCTGGAGCTGAAAACACAGCGGGCTGCTAAGCAACTGTACTCATGCTTGGACCTTGTAAGGCCAGAGCTGCAGCAGAGCAAGAGGTGGACAGCCCTGAAGCACAGCTAAATATAACCTGCAGAGAGAGAAAGCCAGAGgcttggttagttagttagttagcgaGGGTGTTGGGCTTTCTTTGGGATCTCCTCTGCCCTCTCCTTTTTCAAGAATACCCAAGGACGACCCTCACTATTATTAAAAGCGGCCAATTGGAGACCTAAAAAGGAAGATACGTACACAATGACGGAGCTACAGAAGGATAAATATACTCATTAAATGAGGGAAGTCTCCCCTTTGAGCAGACAGGATGGAGAACGCACACACCAAGGAGACACCAGAATGCCTGGCCTACTTCGGCGTGAGCGAGTCCACAGGCCTCACACCAGAACAGGT
>TCONS_00050054
GCACTTTCTGTCAGCCCTGCGCTCCAGAGGGAGGAgaggagaaagagaaagagagaggggagAGAGTATTAAGGGGCCATCTGTTTTGTCCCTATCCTTcacttttaaaaaagtgttgGTGCGTACCCTCAAACTTCtcatttaaagcaaaatataacGACTGGATATGTTAGCTTAGTACTTGGATTTGTCTGCATTTCTCTGAGAGGGAAAGTAACTCAtcctttttttgtgttgttttattgaagTCTCCCCTTTGAGCAGACAGGATGGAGAACGCACACACCAAGGAGACACCAGAATGCCTGGCCTACTTCGGCGTGAGCGAGTCCACAGGCCTCACACCAGAACAGGTCAAGAAGAACCAAGCCAAGTACGGATTCAACGagctgccAGCTGAAGAAGGTAAGAGCATCTGGGAGCTGGTGGTGGAGCAGTTTGAAGATCTGTTGGTCAGGATTCTGCTTTTGGCCGCCTGCATCTCTTTTGTACTGGCCTGGTTTGAGGAAGGTGAGGAAAC
>TCONS_00050055
GCACTTTCTGTCAGCCCTGCGCTCCAGAGGGAGGAgaggagaaagagaaagagagaggggagAGAGTATTAAGGGGCCATCTGTTTTGTCCCTATCCTTcacttttaaaaaagtgttgACAGGATGGAGAACGCACACACCAAGGAGACACCAGAATGCCTGGCCTACTTCGGCGTGAGCGAGTCCACAGGCCTCACACCAGAACAGGTCAAGAAGAACCAAGCCAAGTACGGATTCAACGagctgccAGCTGAAGAAGGTAAGAGCATCTGGGAGCTGGTGGTGGAGCAGTTTGAAGATCTGTTGGTCAGGATTCTGCTTTTGGCCGCCTGCATCTCTTTTGTACTGGCCTGGTTTGAGGAAGGTGAGGAAACAGTCACTGCCTTCGTCGAGCCCTTCGTTATTCTCCTCATCCT
>TCONS_00050056
GCACTTTCTGTCAGCCCTGCGCTCCAGAGGGAGGAgaggagaaagagaaagagagaggggagAGAGTATTAAGGGGCCATCTGTTTTGTCCCTATCCTTcacttttaaaaaagtgttgTCTCCCCTTTGAGCAGACAGGATGGAGAACGCACACACCAAGGAGACACCAGAATGCCTGGCCTACTTCGGCGTGAGCGAGTCCACAGGCCTCACACCAGAACAGGCTACAGAGACTGCCCTTTGCTGCCTGGTTGAAAAGATGAATGTGTTCAACACTGATGTTCGTGGTCTGTCCAAGGTGGAGAGAGCCAACACATGTTGCGCTGTGATCAAGCAGCTTATGAAGAA
>TCONS_00050057
TGCGCTCCAGAGGGAGGAgaggagaaagagaaagagagaggggagAGAGTATTAAGGGGCCATCTGTTTTGTCCCTATCCTTcacttttaaaaaagtgttgTCTCCCCTTTGAGCAGACAGGATGGAGAACGCACACACCAAGGAGACACCAGAATGCCTGGCCTACTTCGGCGTGAGCGAGTCCACAGGCCTCACACCAGAACAGGTCAAGAAGAACCAAGCCAAGTACGGATTCAACGagctgccAGCTGAAGAAGGTAAGAGCATCTGGGAGCTGGTGGTGGAGCAGTTTGAAGATCTGTTGGTCAGGATTCTGCTTTTGGCCGCCTGCATCTCTTTTGTACTGGCCTGGTTTGAGGAAGGTGAGGAAACAGTCACTGCCTTCGTCGAGCCCTTCGTTATTCTCCTCATCCTTATCGCCAATGCAGTGGTTGGAGTATGGCAGGAACGCAATGCGGAGAGTGCCATTGAGGCTCTGAAGGAATATGAGCCAGAGATGGGCAAAGTCTACCGCTCTGACAGAAAGAGTGTGCAGAGGATCAAGGCCAGAGAGATTGTCCCTGGAGACATTGTGGAAGTTTCAGTTGGTGACAAAGTCCCTGCTGATATCAGAATCACCGCCATCCGCTCCACAACCCTGCGCGTCGACCAGTCCATTCTTACTGGTGAGTCTGTTAGTGTGATTAAACACACAGAGTCTGTTCCTGACCCCAGGGCTGTCAACCAGGACAAGAAGAACATGCTTTTCTCTGGCACTAACATCGCTGCTGGCAAGGCTATTGGAGTTGTGGTTGCCACTGGTGTGTCCACTGAAATCGGTAAAATTCGTGACCAGATGGCTGCCACTGAGCAGGAGAAGACCCCTCTGCAGCAGAAGCTGGATGAGTTTGGTGAGCAACTCTCCAAAGTCATCTCTCTCATCTGTGTGGCTGTCTGGCTCATCAACATCGGTCACTTCAACGACCCCGTCCATGGTGGCTCCTGGATCCGTGGTGCCGTCTACTACTTCAAGATCGCTGTGGCTCTTGCCGTAGCTGCCATCCCCGAAGGTTTGCCTGCCGTCATCACAACCTGCTTGGCTCTGGGAACCCGCCGCATGGCCAAGAAGAACGCCATTGTCCGCTCTCTTCCCTCTGTAGAGACTCTGGGCTGCACATCTGTCATTTGCTCAGACAAGACTGGCACCCTTACCACCAACCAGATGTGTGTCACAAAGATGTTTGTCATTGAGAAAGTGGAGGGTGAATCTGTGACTCTTGACCAGTACGACATTTCTGGATCCAAGTACACACCAGAGGGAGAAGTTACTAAGAACGGACTTCCTGTCAAGTGCGGCCAATTTGACGGCCTTGTTGAGCTGGCAACCATCTGCGCTCTGTGCAATGACTCCTCTCTGGACTACAATGAGTCTAAGGGAATCTATGAGAAAGTTGGCGAGGCTACAGAGACTGCCCTTTGCTGCCTGGTTGAAAAGATGAATGTGTTCAACACTGATGTTCGTGGTCTGTCCAAGGTGGAGAGAGCCAACACATGTTGCGCTGTGATCAAGCAGCTTATGAAGAAAGACTTTACTCTGGAGTTCTCCCGTGACAGGAAGTCCATGTCTGTCTACTGCTCCCCTGCAAAGGCCTCCAAGGCTCCTGTTGGAAACAAGATGTTTGTCAAGGGTGCTCCTGAGGGCGTTATTGACAGATGTGCCTATGTGCGTGTTGGCACCACTCGTGTGCCCCTGACTGGTCCAGTTAAAGATAAGATCATGGCTGTGATCAAGGAATGGGGAACTGGCCGTGATACTCTGCGTTGCCTGGCCCTGGCAACCCGTGACAACCCTCTGAGACCAGAGGAAATGAACTTGGAAGACTCCACCAAGTTTGCTGAATATGAGACCGATCTCACCTTCGTGGGTTGTGTTGGTATGCTGGATCCTCCCCGTAAAGAGGTTGTTGGATCCATTGAGCTGTGCAGGGCTGCTGGCATTCGTGTGATCATGATCACAGgtgATAACAAGGGCACTGCTGTGGCTATCTGCCGCCGTATTGGCATCTTCAGTGATGATGAGGATGTAACAGGCCGTGCTTTCACTGGCCGTGAGTTTGATGACCTGCCACTGCCCCAGCAGAGAGAAGCGGTGCGTAAGGCCTGCTGTTACGCTCGTGTTGAGCCCTCCCACAAGAGCAAGATCGTTGAGTTCCTTCAGGGCTTTGATGAGATTACTGCCATGACTGGTGATGGTGTGAACGATGCTCCTGCCCTGAAGAAGGCAGAGATTGGCATTGCCATGGGCTCTGGCACTGCTGTTGCCAAGTCAGCCTCTGAGATGGTCCTGGCCGACGACAACTTCTCTAGCATTGTGGCCGCTGTTGAGGAGGGCAGAGCCATTTACAACAACATGAAGCAGTTCATCCGTTACCTCATCTCCTCTAATGTTGGAGAGGTTGTCTGTATTTTCCTGACTGCAGCTCTTGGTCTTCCTGAGGCTCTGATCCCAGTTCAGCTGCTGTGGGTGAACCTGGTCACTGATGGTCTCCCTGCCACTGCTCTGGGCTTCAACCCCCCTGATTTGGACATCATGGGCAAGGCTCCCCGCTCCCCCAAAGAGCCTCTTATCTCCGGCTGGCTCTTCTTCAGATACCTGGCCATTGGAGGTTATGTTGGTGCTGCAACTGTTGCTGCTGCTGGATGGTGGTTCCTCTACTGTGATGAAGGCCCCATGGTCTCCTTCTACCAGCTGTCCCACTTCATGCAGTGCACTGCTGACAATGAGGACTTTGCCGGTATTGAATGTGAGGTGTTCGAGGCCGCTCCACCAATGACAATGGCTCTGTCTGTGTTGGTCACCATTGAGATGTGCAATGCTCTGAACAGCTTGTCAGAGAATCAGTCTCTTTTGCGTATGCCTCCATGGAGCAACTTGTGGTTGGCGGGAGCCATGACTCTCTCCATGTCTCTGCACTTCATGATCATCTATGTGGACCCTCTGCCTATGATCTTCAAACTAACCCATCTCAACTTTGACCAGTGGATCGTTGTACTGAAGCTTTCCTTCCCAGTCATCCTCATTGACGAAGCTCTGAAATTTGTTGCCCGCAACTACCTGGAGGAGAAAGATCAGAATCTAGTGTCCAAAAAGTGGGACTGAAAAGGAAGAACTAAAACAGCACTCCACGCAGAAAAATGACATTCACCAGGAGTGATACAGAATCCAACCGGGAACCAGTGAAAAATCACCCATAAAATGTAAAACCTTacagaacaaaatgaaaaaaaaatatttaagtaaaaaaaaaaagtgttatgtatatgtattaagacttaatttaatatatataatgttatgaaCAGTATATTCTAATGAAAATGCTATTCTTAAAATAAAGATGTGTATAAAA
>TCONS_00050058
TCTCCCCTTTGAGCAGACAGGATGGAGAACGCACACACCAAGGAGACACCAGAATGCCTGGCCTACTTCGGCGTGAGCGAGTCCACAGGCCTCACACCAGAACAGGTCAAGAAGAACCAAGCCAAGTACGGATTCAACGagctgccAGCTGAAGAAGGTAAGAGCATCTGGGAGCTGGTGGTGGAGCAGTTTGAAGATCTGTTGGTCAGGATTCTGCTTTTGGCCGCCTGCATCTCTTTTGTACTGGCCTGGTTTGAGGAAGGTGAGGAAACAGTCACTGCCTTCGTCGAGCCCTTCGTTATTCTCCTCATCCTTATCGCCAATGCAGTGGTTGGAGTATGGCAGGAACGCAATGCGGAGAGTGCCATTGAGGCTCTGAAGGAATATGAGCCAGAGATGGGCAAAGTCTACCGCTCTGACAGAAAGAGTGTGCAGAGGATCAAGGCCAGAGAGATTGTCCCTGGAGACATTGTGGAAGTTTCAGTTGGTGACAAAGTCCCTGCTGATATCAGAATCACCGCCATCCGCTCCACAACCCTGCGCGTCGACCAGTCCATTCTTACTGGTGAGTCTGTTAGTGTGATTAAACACACAGAGTCTGTTCCTGACCCCAGGGCTGTCAACCAGGACAAGAAGAACATGCTTTTCTCTGGCACTAACATCGCTGCTGGCAAGGCTATTGGAGTTGTGGTTGCCACTGGTGTGTCCACTGAAATCGGTAAAATTCGTGACCAGATGGCTGCCACTGAGCAGGAGAAGACCCCTCTGCAGCAGAAGCTGGATGAGTTTGGTGAGCAACTCTCCAAAGTCATCTCTCTCATCTGTGTGGCTGTCTGGCTCATCAACATCGGTCACTTCAACGACCCCGTCCATGGTGGCTCCTGGATCCGTGGTGCCGTCTACTACTTCAAGATCGCTGTGGCTCTTGCCGTAGCTGCCATCCCCGAAGGTTTGCCTGCCGTCATCACAACCTGCTTGGCTCTGGGAACCCGCCGCATGGCCAAGAAGAACGCCATTGTCCGCTCTCTTCCCTCTGTAGAGACTCTGGGCTGCACATCTGTCATTTGCTCAGACAAGACTGGCACCCTTACCACCAACCAGATGTGTGTCACAAAGATGTTTGTCATTGAGAAAGTGGAGGGTGAATCTGTGACTCTTGACCAGTACGACATTTCTGGATCCAAGTACACACCAGAGGGAGAAGTTACTAAGAACGGACTTCCTGTCAAGTGCGGCCAATTTGACGGCCTTGTTGAGCTGGCAACCATCTGCGCTCTGTGCAATGACTCCTCTCTGGACTACAATGAGTCTAAGGGAATCTATGAGAAAGTTGGCGAGGCTACAGAGACTGCCCTTTGCTGCCTGGTTGAAAAGATGAATGTGTTCAACACTGATGTTCGTGGTCTGTCCAAGGTGGAGAGAGCCAACACATGTTGCGCTGTGATCAAGCAGCTTATGAAGAAAGACTTTACTCTGGAGTTCTCCCGTGACAGGAAGTCCATGTCTGTCTACTGCTCCCCTGCAAAGGCCTCCAAGGCTCCTGTTGGAAACAAGATGTTTGTCAAGGGTGCTCCTGAGGGCGTTATTGACAGATGTGCCTATGTGCGTGTTGGCACCACTCGTGTGCCCCTGACTGGTCCAGTTAAAGATAAGATCATGGCTGTGATCAAGGAATGGGGAACTGGCCGTGATACTCTGCGTTGCCTGGCCCTGGCAACCCGTGACAACCCTCTGAGACCAGAGGAAATGAACTTGGAAGACTCCACCAAGTTTGCTGAATATGAGACCGATCTCACCTTCGTGGGTTGTGTTGGTATGCTGGATCCTCCCCGTAAAGAGGTTGTTGGATCCATTGAGCTGTGCAGGGCTGCTGGCATTCGTGTGATCATGATCACAGgtgATAACAAGGGCACTGCTGTGGCTATCTGCCGCCGTATTGGCATCTTCAGTGATGATGAGGATGTAACAGGCCGTGCTTTCACTGGCCGTGAGTTTGATGACCTGCCACTGCCCCAGCAGAGAGAAGCGGTGCGTAAGGCCTGCTGTTACGCTCGTGTTGAGCCCTCCCACAAGAGCAAGATCGTTGAGTTCCTTCAGGGCTTTGATGAGATTACTGCCATGACTGGTGATGGTGTGAACGATGCTCCTGCCCTGAAGAAGGCAGAGATTGGCATTGCCATGGGCTCTGGCACTGCTGTTGCCAAGTCAGCCTCTGAGATGGTCCTGGCCGACGACAACTTCTCTAGCATTGTGGCCGCTGTTGAGGAGGGCAGAGCCATTTACAACAACATGAAGCAGTTCATCCGTTACCTCATCTCCTCTAATGTTGGAGAGGTTGTCTGTATTTTCCTGACTGCAGCTCTTGGTCTTCCTGAGGCTCTGATCCCAGTTCAGCTGCTGTGGGTGAACCTGGTCACTGATGGTCTCCCTGCCACTGCTCTGGGCTTCAACCCCCCTGATTTGGACATCATGGGCAAGGCTCCCCGCTCCCCCAAAGAGCCTCTTATCTCCGGCTGGCTCTTCTTCAGATACCTGGCCATTGGAGGTTATGTTGGTGCTGCAACTGTTGCTGCTGCTGGATGGTGGTTCCTCTACTGTGATGAAGGCCCCATGGTCTCCTTCTACCAGCTGTCCCACTTCATGCAGTGCACTGCTGACAATGAGGACTTTGCCGGTATTGAATGTGAGGTGTTCGAGGCCGCTCCACCAATGACAATGGCTCTGTCTGTGTTGGTCACCATTGAGATGTGCAATGCTCTGAACAGCTTGTCAGAGAATCAGTCTCTTTTGCGTATGCCTCCATGGAGCAACTTGTGGTTGGCGGGAGCCATGACTCTCTCCATGTCTCTGCACTTCATGATCATCTATGTGGACCCTCTGCCTATGATCTTCAAACTAACCCATCTCAACTTTGACCAGTGGATCGTTGTACTGAAGCTTTCCTTCCCAGTCATCCTCATTGACGAAGCTCTGAAATTTGTTGCCCGCAACTACCTGGAGGCCTAATCCTGTTCCCCTCCATATTCCTGTAACAAAGCCAG
>TCONS_00050059
ATGGAGAACGCACACACCAAGGAGACACCAGAATGCCTGGCCTACTTCGGCGTGAGCGAGTCCACAGGCCTCACACCAGAACAGGTCAAGAAGAACCAAGCCAAGTACGGATTCAACGagctgccAGCTGAAGAAGGTAAGAGCATCTGGGAGCTGGTGGTGGAGCAGTTTGAAGATCTGTTGGTCAGGATTCTGCTTTTGGCCGCCTGCATCTCTTTTGTACTGGCCTGGTTTGAGGAAGGTGAGGAAACAGTCACTGCCTTCGTCGAGCCCTTCGTTATTCTCCTCATCCTTATCGCCAATGCAGTGGTTGGAGTATGGCAGGAACGCAATGCGGAGAGTGCCATTGAGGCTCTGAAGGAATATGAGCCAGAGATGGGCAAAGTCTACCGCTCTGACAGAAAGAGTGTGCAGAGGATCAAGGCCAGAGAGATTGTCCCTGGAGACATTGTGGAAGTTTCAGTTGGTGACAAAGTCCCTGCTGATATCAGAATCACCGCCATCCGCTCCACAACCCTGCGCGTCGACCAGTCCATTCTTACTGGTGAGTCTGTTAGTGTGATTAAACACACAGAGTCTGTTCCTGACCCCAGGGCTGTCAACCAGGACAAGAAGAACATGCTTTTCTCTGGCACTAACATCGCTGCTGGCAAGGCTATTGGAGTTGTGGTTGCCACTGGTGTGTCCACTGAAATCGGTAAAATTCGTGACCAGATGGCTGCCACTGAGCAGGAGAAGACCCCTCTGCAGCAGAAGCTGGATGAGTTTGGTGAGCAACTCTCCAAAGTCATCTCTCTCATCTGTGTGGCTGTCTGGCTCATCAACATCGGTCACTTCAACGACCCCGTCCATGGTGGCTCCTGGATCCGTGGTGCCGTCTACTACTTCAAGATCGCTGTGGCTCTTGCCGTAGCTGCCATCCCCGAAGGTTTGCCTGCCGTCATCACAACCTGCTTGGCTCTGGGAACCCGCCGCATGGCCAAGAAGAACGCCATTGTCCGCTCTCTTCCCTCTGTAGAGACTCTGGGCTGCACATCTGTCATTTGCTCAGACAAGACTGGCACCCTTACCACCAACCAGATGTGTGTCACAAAGATGTTTGTCATTGAGAAAGTGGAGGGTGAATCTGTGACTCTTGACCAGTACGACATTTCTGGATCCAAGTACACACCAGAGGGAGAAGTTACTAAGAACGGACTTCCTGTCAAGTGCGGCCAATTTGACGGCCTTGTTGAGCTGGCAACCATCTGCGCTCTGTGCAATGACTCCTCTCTGGACTACAATGAGTCTAAGGGAATCTATGAGAAAGTTGGCGAGGCTACAGAGACTGCCCTTTGCTGCCTGGTTGAAAAGATGAATGTGTTCAACACTGATGTTCGTGGTCTGTCCAAGGTGGAGAGAGCCAACACATGTTGCGCTGTGATCAAGCAGCTTATGAAGAAAGACTTTACTCTGGAGTTCTCCCGTGACAGGAAGTCCATGTCTGTCTACTGCTCCCCTGCAAAGGCCTCCAAGGCTCCTGTTGGAAACAAGATGTTTGTCAAGGGTGCTCCTGAGGGCGTTATTGACAGATGTGCCTATGTGCGTGTTGGCACCACTCGTGTGCCCCTGACTGGTCCAGTTAAAGATAAGATCATGGCTGTGATCAAGGAATGGGGAACTGGCCGTGATACTCTGCGTTGCCTGGCCCTGGCAACCCGTGACAACCCTCTGAGACCAGAGGAAATGAACTTGGAAGACTCCACCAAGTTTGCTGAATATGAGACCGATCTCACCTTCGTGGGTTGTGTTGGTATGCTGGATCCTCCCCGTAAAGAGGTTGTTGGATCCATTGAGCTGTGCAGGGCTGCTGGCATTCGTGTGATCATGATCACAGgtgATAACAAGGGCACTGCTGTGGCTATCTGCCGCCGTATTGGCATCTTCAGTGATGATGAGGATGTAACAGGCCGTGCTTTCACTGGCCGTGAGTTTGATGACCTGCCACTGCCCCAGCAGAGAGAAGCGGTGCGTAAGGCCTGCTGTTACGCTCGTGTTGAGCCCTCCCACAAGAGCAAGATCGTTGAGTTCCTTCAGGGCTTTGATGAGATTACTGCCATGACTGGTGATGGTGTGAACGATGCTCCTGCCCTGAAGAAGGCAGAGATTGGCATTGCCATGGGCTCTGGCACTGCTGTTGCCAAGTCAGCCTCTGAGATGGTCCTGGCCGACGACAACTTCTCTAGCATTGTGGCCGCTGTTGAGGAGGGCAGAGCCATTTACAACAACATGAAGCAGTTCATCCGTTACCTCATCTCCTCTAATGTTGGAGAGGTTGTCTGTATTTTCCTGACTGCAGCTCTTGGTCTTCCTGAGGCTCTGATCCCAGTTCAGCTGCTGTGGGTGAACCTGGTCACTGATGGTCTCCCTGCCACTGCTCTGGGCTTCAACCCCCCTGATTTGGACATCATGGGCAAGGCTCCCCGCTCCCCCAAAGAGCCTCTTATCTCCGGCTGGCTCTTCTTCAGATACCTGGCCATTGGAGGTTATGTTGGTGCTGCAACTGTTGCTGCTGCTGGATGGTGGTTCCTCTACTGTGATGAAGGCCCCATGGTCTCCTTCTACCAGCTGTCCCACTTCATGCAGTGCACTGCTGACAATGAGGACTTTGCCGGTATTGAATGTGAGGTGTTCGAGGCCGCTCCACCAATGACAATGGCTCTGTCTGTGTTGGTCACCATTGAGATGTGCAATGCTCTGAACAGCTTGTCAGAGAATCAGTCTCTTTTGCGTATGCCTCCATGGAGCAACTTGTGGTTGGCGGGAGCCATGACTCTCTCCATGTCTCTGCACTTCATGATCATCTATGTGGACCCTCTGCCTATGATCTTCAAACTAACCCATCTCAACTTTGACCAGTGGATCGTTGTACTGAAGCTTTCCTTCCCAGTCATCCTCATTGACGAAGCTCTGAAATTTGTTGCCCGCAACTACCTGGAGGCCTAATCCTGTTCCCCTCCATATTCCTGTAACAAAGCCAGAGAAAGATCAGAATCTAGTGTCCAAAAAGTGGGACTGAAAAGGAAGAACTAAAACAGCACTCCACGCAGAAAAATGACATTCACCAGGAGTGATACAGAATCCAACCGGGAACCAGTGAAAAATCACCCATAAAATGTAAAACCTTacagaacaaaatgaaaaaaaaatatttaagtaaaaaaaaaaagtgttatgtatatgtattaagacttaatttaatatatataatgttatgaaCAGTATATTCTAATGAAAATGCTATTCTTAAAATAAAGATGTGTATAAAACAA

Function

symbol description
atp2a1 Predicted to enable ATP binding activity; P-type calcium transporter activity; and calcium ion binding activity. Acts upstream of or within several processes, including cellular calcium ion homeostasis; negative regulation of muscle contraction; and relaxation of skeletal muscle. Predicted to be located in several cellular components, including endoplasmic reticulum; endoplasmic reticulum-Golgi intermediate compartment; and sarcomere. Predicted to be active in sarcoplasmic reticulum membrane. Predicted to be integral component of membrane. Is expressed in several structures, including eye; gill; mesoderm; musculature system; and pectoral fin. Used to study Brody myopathy. Human ortholog(s) of this gene implicated in Brody myopathy. Orthologous to human ATP2A1 (ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1).

GO:

id name namespace
GO:0006937 regulation of muscle contraction biological_process
GO:0006942 regulation of striated muscle contraction biological_process
GO:0009612 response to mechanical stimulus biological_process
GO:0090076 relaxation of skeletal muscle biological_process
GO:0070588 calcium ion transmembrane transport biological_process
GO:0006811 ion transport biological_process
GO:0045932 negative regulation of muscle contraction biological_process
GO:0006816 calcium ion transport biological_process
GO:0031448 positive regulation of fast-twitch skeletal muscle fiber contraction biological_process
GO:0006874 cellular calcium ion homeostasis biological_process
GO:0045988 negative regulation of striated muscle contraction biological_process
GO:0048471 perinuclear region of cytoplasm cellular_component
GO:0005783 endoplasmic reticulum cellular_component
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0005793 endoplasmic reticulum-Golgi intermediate compartment cellular_component
GO:0016529 sarcoplasmic reticulum cellular_component
GO:0033017 sarcoplasmic reticulum membrane cellular_component
GO:0031673 H zone cellular_component
GO:0031674 I band cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005388 calcium transmembrane transporter activity, phosphorylative mechanism molecular_function
GO:0005509 calcium ion binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0008553 proton-exporting ATPase activity, phosphorylative mechanism molecular_function
GO:0016887 ATPase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-020905-1 Predicted to enable ATP binding activity; P-type calcium transporter activity; and calcium ion binding activity. Acts upstream of or within several processes, including cellular calcium ion homeostasis; negative regulation of muscle contraction; and relaxation of skeletal muscle. Predicted to be located in several cellular components, including endoplasmic reticulum; endoplasmic reticulum-Golgi intermediate compartment; and sarcomere. Predicted to be active in sarcoplasmic reticulum membrane. Predicted to be integral component of membrane. Is expressed in several structures, including eye; gill; mesoderm; musculature system; and pectoral fin. Used to study Brody myopathy. Human ortholog(s) of this gene implicated in Brody myopathy. Orthologous to human ATP2A1 (ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1).

Ensembl:

ensembl_id ENSDARG00000020574

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050051 False 1049 mRNA 0.49 9 26081343 26147475
TCONS_00050053 False 502 mRNA 0.49 3 26135502 26145119
TCONS_00050054 False 520 lncRNA 0.48 4 26144765 26147433
TCONS_00050055 False 416 mRNA 0.52 5 26144765 26147475
TCONS_00050056 False 348 processed_transcript 0.51 4 26144765 26151560
TCONS_00050057 False 3390 mRNA 0.50 24 26144782 26157063
TCONS_00050058 False 3041 mRNA 0.52 23 26145013 26154894
TCONS_00050059 True 3311 mRNA 0.50 24 26145034 26157066

Neighbor

gene id symbol gene type direction distance location
XLOC_025371 NA coding upstream 943 26076494 ~ 26080400 (+)
XLOC_025370 si:dkeyp-69e1.8 coding upstream 10542 26064091 ~ 26070801 (+)
XLOC_025369 hmgxb4a coding upstream 21296 26044969 ~ 26060047 (+)
XLOC_025368 ankrd54 coding upstream 36584 26035550 ~ 26044759 (+)
XLOC_025367 foxred2 coding upstream 48631 26019426 ~ 26032712 (+)
XLOC_025374 FP016144.1 coding downstream 37278 26194344 ~ 26194459 (+)
XLOC_025375 nudt9 coding downstream 66310 26223376 ~ 26232773 (+)
XLOC_025376 atad5a coding downstream 87287 26244353 ~ 26266464 (+)
XLOC_025377 adap2 coding downstream 110659 26267725 ~ 26281561 (+)
XLOC_025378 rhot1a coding downstream 131915 26288981 ~ 26319758 (+)
XLOC_025429 BX649540.1 misc downstream 4091673 30248739 ~ 30249036 (+)
XLOC_025364 NA non-coding upstream 94399 25985339 ~ 25986944 (+)
XLOC_025360 FP101990.1 non-coding upstream 236015 25844151 ~ 25845328 (+)
XLOC_025358 BX120006.1 non-coding upstream 327794 25752221 ~ 25753549 (+)
XLOC_025357 BX120006.2 non-coding upstream 334425 25745636 ~ 25746918 (+)
XLOC_025382 NA non-coding downstream 198228 26355294 ~ 26361798 (+)
XLOC_025383 NA non-coding downstream 254167 26411233 ~ 26416784 (+)
XLOC_025384 NA non-coding downstream 478754 26635820 ~ 26636398 (+)
XLOC_025390 NA non-coding downstream 1137242 27294308 ~ 27343689 (+)

Expression


Co-expression Network