G607890


Basic Information

Item Value
gene id G607890
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 41443542 ~ 41445386 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU692132
tattgtgtgtagattgatgtgagaaaaaaaaacaatttcatccattttagaataaggctgtaacgtaacaaaaagtggaataagtcaaggggtctgaatactttcacagTGCACTGTATAAGACCTGTTCAAATTATCACTTTAACGCTCAACATCGCCACTTCATATGCACACTCGCTCCgaaatgggaaaaatatcctttctgttttattcagctaagttcaattatattcttcttactataaaatcctataatataaaataatggaaTGGGACTTAAAAGCATTTCTTGTCTAcaaaatgaacaagcctacagcctatagccagataacatactcatattaaattgtctgtctgtaatggtgtGCCCCAGGGCTCTGTACTTTGTcccctcttattcactatttctATAATTAATTTAGACAAAAATTTGAAAAATGAGTAACTTcacttttatgctgatgatactgttatttattgttgtgcctcgtctctcacaaaagctttccagaacttgcaaactaCTTTTTATACAGTTCAACATACCATACCAACATACTAAACTAATGGTGTAAAGCAAGAAATAGATCTGTGAaactttcacctattactacctgtcagggcaatgaAATTGAGagtgtaacctcatataaatatgttggaattttaattgattatggcctctcttttaaattgcatattcaacaacttgcAAAAAAAATTAAGCTgaagttgggattttattttaggaataaggcctatttttcttttgaagccaggaggctacatttatgcctttactagactatggggatattttatatatgaatgcttccaaGACGCATTGAGATTTATTTAAACTGCAAAAcacttacgcaccactgcactttataTACCAGGgctggctggccttctctagtcactcataggctcagtcactggtatacttttatttacaaagccattttgggtttaataccattttatttgggcatttttattgttcagaaatgtggtgggtactctcttcgttcgcaggactttatcctgctaactgttagaaatgtccgaactgaatttggtaaaagggcttttatgtactctgcgccatctgcttggaacgccttacaaaatacttttaaatcactgatgaaggattttgagactgattccctgacctgtcaatgtttttaattttctgTTTTATGATTTTGCTCTTGtaaattctatggtttttactagattacttgtagtctttcatgttgtctgtctgtatttgtgtaatgacttggtgctgcctatcttggccaggatgctcttgaaaaagagatttcaaatctcaatgagcccttcctggttaaataaaggttaaataaataaatattctcaactcatattctgttcttctgaaaacaAATtatcttcatatcatgtttctttagacctgcctaaaataaataatggatttattgtgattgtgtatattaaaattgatttattttacgttttttaaatgtagatgttccaaaggcgtGCATCAGCGGCTTATAtgcgtggaggcctggagatgctaaacatgtttatgttaattaactgtcaattaccatgagaccggcTGACAAAAtatcatgaccgccacagccctagctcCTGCCCAGCTTTGCTGGTGTCCAGAGGGCTACTGCTCAGTCCTCCATTCTGGATGGACATACTGCTAGAGGTCACTCTCCTCTGCCAGACCTGTAGAAGACTCCACCATGATTTTAAGGGAAGCCAGTCGTGTTACTACATCTTCTTCTCCTTCAGCGTCAGTGAAGTCGAAGCCAGTGTACCCCTGCTCCTCCA
>TU692135
tattgtgtgtagattgatgtgagaaaaaaaaacaatttcatccattttagaataaggctgtaacgtaacaaaaagtggaataagtcaaggggtctgaatactttcacagTGCACTGTATAAGACCTGTTCAAATTATCACTTTAACGCTCAACATCGCCACTTCATATGCACACTCGCTCCgaaatgggaaaaatatcctttctgttttattcagctaagttcaattatattcttcttactataaaatcctataatataaaataatggaaTGGGACTTAAAAGCATTTCTTGTCTAcaaaatgaacaagcctacagcctatagccagataacatactcatattaaattgtctgtctgtaatggtgtGCCCCAGGGCTCTGTACTTTGTcccctcttattcactatttctATAATTAATTTAGACAAAAATTTGAAAAATGAGTAACTTcacttttatgctgatgatactgttatttattgttgtgcctcgtctctcacaaaagctttccagaacttgcaaactaCTTTTTATACAGTTCAACATACCATACCAACATACTAAACTAATGGTGTAAAGCAAGAAATAGATCTGTGAaactttcacctattactacctgtcagggcaatgaAATTGAGagtgtaacctcatataaatatgttggaattttaattgattatggcctctcttttaaattgcatattcaacaacttgcAAAAAA
>TU692131
ttattgttgtgcctcgtctctcacaaaagctttccagaacttgcaaactaCTTTTTATACAGTTCAACATACCATACCAACATACTAAACTAATGGTGTAAAGCAAGAAATAGATCTGTGAaactttcacctattactacctgtcagggcaatgaAATTGAGagtgtaacctcatataaatatgttggaattttaattgattatggcctctcttttaaattgcatattcaacaacttgcAAAAAAAATTAAGCTgaagttgggattttattttaggaataaggcctatttttcttttgaagccaggaggctacatttatgcctttactagactatggggatattttatatatgaatgcttccaaGACGCATTGAGATTTATTTAAACTGCAAAAcacttacgcaccactgcactttataTACCAGGgctggctggccttctctagtcactcataggctcagtcactggtatacttttatttacaaagccattttgggtttaataccattttatttgggcatttttattgttcagaaatgtggtgggtactctcttcgttcgcaggactttatcctgctaactgttagaaatgtccgaactgaatttggtaaaagggcttttatgtactctgcgccatctgcttggaacgccttacaaaatacttttaaatcactgatgaaggattttgagactgattccctgacctgtcaatgtttttaattttctgTTTTATGATTTTGCTCTTGtaaattctatggtttttactagattacttgtagtctttcatgttgtctgtctgtatttgtgtaatgacttggtgctgcctatcttggccaggatgctcttgaaaaagagatttcaaatctcaatgagcccttcctggttaaataaaggttaaataaataaatattctcaactcatattctgttcttctgaaaacaAATtatcttcatatcatgtttctttagacctgcctaaaataaataatggatttattgtgattgtgtatattaaaattgatttattttacgttttttaaatgtagatgttccaaaggcgtGCATCAGCGGCTTATAtgcgtggaggcctggagatgctaaacatgtttatgttaattaactgtcaattaccatgagaccggcTGACAAAAtatcatgaccgccacagccctagctcCTGCCCAGCTTTGCTGGTGTCCAGAGGGCTACTGCTCAGTCCTCCATTCTGGATGGACATACTGCTAGAGGTCACTCTCCTCTGCCAGACCTGTAGAAGACTCCACCATGATTTTAAGGGAAGCCAGTCGTGTTACTACATCTTCTTCTCCTTCAGCGTCAGTGAAGTCGAAGCCAGTGTACCCCTGCTCCTCCA
>TU692133
ttattgttgtgcctcgtctctcacaaaagctttccagaacttgcaaactaCTTTTTATACAGTTCAACATACCATACCAACATACTAAACTAATGGTGTAAAGCAAGAAATAGATCTGTGAaactttcacctattactacctgtcagggcaatgaAATTGAGagtgtaacctcatataaatatgttggaattttaattgattatggcctctcttttaaattgcatattcaacaacttgcAAAAAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU692132 False 1845 lncRNA 0.36 1 41443542 41445386
TU692135 False 719 lncRNA 0.33 1 41443542 41444260
TU692131 False 1371 lncRNA 0.38 1 41444016 41445386
TU692133 True 245 lncRNA 0.33 1 41444016 41444260

Neighbor

gene id symbol gene type direction distance location
rhoca rhoc coding upstream 3594 41414403 ~ 41439948 (+)
ppm1j LOC106582733 coding upstream 32230 41361189 ~ 41411312 (+)
si:ch211-105j21.9 LOC106582731 coding upstream 660325 40778742 ~ 40783217 (+)
LOC110527761 LOC106582730 coding upstream 665471 40768279 ~ 40778071 (+)
tspan2a LOC106582727 coding upstream 709958 40715927 ~ 40733584 (+)
st7l LOC106582738 coding downstream 40302 41485688 ~ 41503766 (+)
LOC118965381 NA coding downstream 72399 41517785 ~ 41519333 (+)
LOC118965355 LOC106582742 coding downstream 170198 41615584 ~ 41616729 (+)
LOC110527773 LOC106582742 coding downstream 216148 41661534 ~ 41728773 (+)
LOC110527774 LOC106582743 coding downstream 297175 41742561 ~ 41754877 (+)
G607805 NA non-coding upstream 128673 41312555 ~ 41314869 (+)
G607693 NA non-coding upstream 285781 41156692 ~ 41157761 (+)
G607679 NA non-coding upstream 298920 41144403 ~ 41144622 (+)
G607612 NA non-coding upstream 345904 41097375 ~ 41097638 (+)
G607605 NA non-coding upstream 351057 41092272 ~ 41092485 (+)
G607891 NA non-coding downstream 483 41445869 ~ 41446193 (+)
G607892 NA non-coding downstream 910 41446296 ~ 41446571 (+)
G607908 NA non-coding downstream 23232 41468618 ~ 41468856 (+)
G607910 NA non-coding downstream 23710 41469096 ~ 41484386 (+)
G608166 NA non-coding downstream 61433 41506819 ~ 41507211 (+)
G606977 NA other upstream 809103 40634181 ~ 40634439 (+)
LOC110527751 NA other upstream 1002910 40438879 ~ 40457742 (+)
G606469 NA other upstream 1212317 40230885 ~ 40231225 (+)
G606464 LOC106582711 other upstream 1219371 40223027 ~ 40224171 (+)
G606452 LOC106582711 other upstream 1236645 40206569 ~ 40206897 (+)
G607904 NA other downstream 17438 41462824 ~ 41463169 (+)
G608390 LOC106582745 other downstream 381825 41827211 ~ 41830808 (+)
G609436 NA other downstream 1375570 42820956 ~ 42821245 (+)
G610436 NA other downstream 1965005 43410391 ~ 43410806 (+)
G610563 LOC106582806 other downstream 2138634 43584020 ~ 43584896 (+)

Expression


Co-expression Network