G608456


Basic Information

Item Value
gene id G608456
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 41844374 ~ 41846862 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU692745
aaagaaaaaaaacatagcACTTATTGTATTACAATGTCTTACCATCCATTAAACAACAGACAACCAACAAGTAAGAGCTGGGAACTGTTCTACTAGTAACAAATGTAATTTACGCTCTGGTAAAatgtacaacaaaaaaaaaaaatgtgcattcAAAATTTAGAAAGTTTTTTTCAATTATGTGCTTGTGAActtgtgattttctgtatttctgCTTACATTTTTACCTAAAATGTCATAATAGATGTGAACATGTTTAAtcaaataatacaaaaacaattgTACTTTTAAATTTCTTTACTGAGACAATTGATCCAACATTCAATTTCTTTGttaggaaaagtatgtgaacctctaGATTAATCATCTGCATTAAGTGTATTTAAGTAGTCAAAAGTATAGTATTTGGTTCCTAGCAtgtaatgactacatcaagcttgtgactacaaaacctctggatgcatttgcagtttgtttttgtCGGGTTTTGGATGATGTTCTTCCCAATAGTAACCGAATGGGGAATGATGACTGgagtatttgtatttttaattgaGTAGATAAGACGTTTGTAACCTTCTCACTTAACATCATTCATGATCTATTCATGATTATCCATCATGgcggtagcatccacatgaatgtggAAACGTTCAAAAACAGGCTCTATTCTTACCTaaaaataaaagtgactccaaaaagACAAGCCGTCACGTTTCTGTTGGGCAAAACATAAACCAAAACACTTttaaaacaaactgcaaatgcatcccaGGAGTTTATAAAAAGTCACAAACTTGATGTAGTCactgcatgctaggaatatgggaccgaatactacacttttgactactttaatacacttaATTCAGATGATTAATCTAagaggttcacatactttttccaacgaCGAAATGTAATGTTGGATCAATTGTCTCAATAAAGAAATTAAAGGGTACAATtgtttttgtgttatttgtttaAAATCAGGGTCAACTTGATCTATTAGTAAGACTCACACTCTAGGTCAAATGTATGCAGAAATTCTAAACAGTTCAAACGTTCTCAACCCACAACAtgtacactttacatgttgataAAAAACATTACAGTAATCCAATTCAAATAATAAAATATCAATAGGGTTTATGAATAAGAGTATGTCACTGTTTTACATTGACACGTTTAAACACGGGCTGGCCAAGAAGAATCTGTATATCTATTGCACGATTGCTTCATCATTCCTCTCTGAACAAATATGCTAAAACTCTCAAAATGATTCCATAGAAAAATCTGTTAAGAATCTCAGGGTGGGTAAAATAGAATGTCACCTGATCCGATACATTTGACCTGGGACGAGCCCTTCAGTGGTTACTAATAGTAAACTGTACAACATGCTCAACACGTACAGTTCCAACATCCTACAAGGGGCACAACAATGGCTCAGAGAAAAAGATCATAGCCAAAAATAAAGACAGTGTGAGGAAATGCTCGAAGCATTTCATggtcaaacatttaaaaaaaaaagttgtgtcTGTTACAACAATAATAAGACATGTTCAGATATTGTCGACAAAATATGTCTTGAAACAGTTCCTTGAATTCACGATGACACGAGGCTCAGATGTGTTATTTAAGTTAAATATTGGCTGGATATATTACTGAAAATTAACATTCATACAGATTCCACTAATAAATAAACGTATTTCTGACATCTTGAGTACCATGACAAATTGGTATGTAGCAGAACATGTACTGTCTAACTGACGTTCGAATATACATAAAGTAAATGTTAATATATTACAGAAGACAAGCTGAGCATGAGTTAACAAAGAAATCCCCACAGAGAGCTTCTGAGCATTCTGACTTTAATACAACAGATAAGAGTCAACCAGCTCTCATGCACACCCTGTTATCTGCAGGTATGACCCTCGCTCTGTCCACTACCGGATTAAAGCCAAGCAAACATGTGAGAGACAGACATTCACCATTCCTCAAGTCAAATGTCTTAAGCAGAGAATTCATGTCAAACAAAGCATGTGACCTTGAAGAACGCCGTCTTGGGTTACGCTAATTGTGAGGGATAGATGTCAGAGTAAGTGCACGGATGATGGTGGGTTAACCTCACTTTGGAATGGTGTGACATTTTCCACATTAGACTGTCAGTAGGAATCAAGTTCAGTgccaggacagacaggagaacCCCCAACTCAGCATATGCTCCTGTTCCTTTAAAGGACGTAGAAAATAAAGGACAATAAAGTGCCTCTGGTTATCTTTCACGAGGCAACCGTTAGGAGAGCCGGAGCCATGGTTGCCTTCTTGTGGTCGCCTTCTCATCTTGACGCAGTGCTTAGTTTGTTTCTCCTCTCCATGTACAGTACTTGCTTTCATCCCATCAGTGACCGGGGTGGGGAGTGTACTGTGGCGGGGAGTAAGGAGGGGGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU692745 True 2447 lncRNA 0.37 2 41844374 41846862

Neighbor

gene id symbol gene type direction distance location
LOC110527774 LOC106582743 coding upstream 89497 41742561 ~ 41754877 (+)
LOC110527773 LOC106582742 coding upstream 115601 41661534 ~ 41728773 (+)
LOC118965355 LOC106582742 coding upstream 227645 41615584 ~ 41616729 (+)
LOC118965381 NA coding upstream 325069 41517785 ~ 41519333 (+)
st7l LOC106582738 coding upstream 340608 41485688 ~ 41503766 (+)
LOC110527781 LOC106582750 coding downstream 97675 41944537 ~ 41956332 (+)
LOC110527782 LOC106582752 coding downstream 154061 42000923 ~ 42059047 (+)
LOC110527783 LOC106582753 coding downstream 213466 42060328 ~ 42225672 (+)
LOC110527785 LOC106582755 coding downstream 379946 42226808 ~ 42232599 (+)
mst1ra LOC106582756 coding downstream 516768 42363630 ~ 42384059 (+)
G608389 NA non-coding upstream 26660 41808153 ~ 41817714 (+)
G608383 NA non-coding upstream 128287 41715848 ~ 41716087 (+)
G608371 NA non-coding upstream 147969 41696202 ~ 41696405 (+)
G608316 NA non-coding upstream 216753 41627303 ~ 41627621 (+)
G608315 NA non-coding upstream 217425 41626717 ~ 41626949 (+)
G608446 NA non-coding downstream 28347 41875209 ~ 41877230 (+)
G609098 NA non-coding downstream 417574 42264436 ~ 42264667 (+)
G609099 NA non-coding downstream 418419 42265281 ~ 42265618 (+)
G609108 NA non-coding downstream 426955 42273817 ~ 42274036 (+)
G609113 NA non-coding downstream 428964 42275826 ~ 42276063 (+)
G608390 LOC106582745 other upstream 13566 41827211 ~ 41830808 (+)
G607904 NA other upstream 381205 41462824 ~ 41463169 (+)
G606977 NA other upstream 1209935 40634181 ~ 40634439 (+)
LOC110527751 NA other upstream 1403742 40438879 ~ 40457742 (+)
G606469 NA other upstream 1613149 40230885 ~ 40231225 (+)
G609436 NA other downstream 974094 42820956 ~ 42821245 (+)
G610436 NA other downstream 1563529 43410391 ~ 43410806 (+)
G610563 LOC106582806 other downstream 1737158 43584020 ~ 43584896 (+)
G610622 NA other downstream 1982142 43829004 ~ 43831880 (+)
si:dkey-264d12.5 LOC106582817 other downstream 2155762 44002556 ~ 44035143 (+)

Expression


Co-expression Network