G608954


Basic Information

Item Value
gene id G608954
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 42056266 ~ 42059029 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU693306
TTTTTTAATTGTCAGACTAAAACTGTCCCAGCTATTTACACTATACAAGCTAGATATGCATCAAGAATATAAAGGGTTTACATTTATATACATTATTTATATAAGCCGCTTTATAAGCCCAAAATTCATATATAACTTGTTATTCACTCAGTCCTTTAATTTCCTTAGAAATAAATTGCAAAGGTAAAACaagagctacaacaacaggttaaCTGGCTGGCATAGTTTGGGTATAAGAGAAAGAGGCAAAATGTTGAGAATGTCGCCTCTGACATTATAATAGGGGTAGCAAAGCTCTAAAGTTGAAGAGCAAGGCCTCTCAGAGAGAAACAGTTAGGTAGTAGCTAGATATGTAGACACAATCCCAGACAGAAGAGGCCTAATCCCAGTCTATGGCAAACTGTTGCCTCCTTGACTGGTCTTGACCAGGCTTGATGAGTAAAAGAAACAGCTCAATAACATTctattgattacaaattacaaaTCAATTAATGTACACAAGAGAAAGCAACACCGGCTACAGTGTTTTAGAATAAAATAAGAAAGGAACAATCGTCTTACATACATTACGTAGGACTTGCCAGGATATATTGGTAACAATGTTATTACAATGCTATTTATGTTTTTTGAGAGATACGACGTCACAGTGTTGAATGTTGCACTACACAATTGAGAAGCCTTAAGAAGGGGCATTGGGCTATCGAATCAAACTAAATCTAACAATCACAATTCACTTAATTGTCAAACTGTACTTGATCACAAGAGCTCACTGTTAGAGACCAGATACGTTTTGGAAATAGAGCCCAAACATCAACGTATTATGGATTGAATATCACAGTAGTTACGGTAAATTAATGAATTAAATCAGCCAATCACCAGACAGACTGGACAGGTGACACATCAGCTTTCCTTCACTAAAACTTCCAACCACAAGATCAATCACAAAACAAGTGGAAAAGAGATATTAAAATACAATATAGAGTAGTTCAACAACATGGACGGACCGTATGTCACAACTAACACATAACTAAAACACGTTTCCTACATATTTTGTCATGCCAAAAACAGTAAGCTTAACCATTCGTAGTAACTGAAAGGGTTCACCTGAACTGTACTGAATTTAAACGAGGGTTTACAAATGAATTGTAGAAATATAAGTATGAGTGAAATATGTGCTATTAGTGTTAAAAAGGCTAGTTTAAGTTGTTGATCTTAATTTAAAACACAATTGATCATAAAAATCAGTCAATTCTGTATCTAGGATGTCAGTTGATCATCTAACTAACATGAATGTAAAAGGCTCTATATGTTTTTTCTTCTTAATCAGCTCAGTGCCCTATAGCTCACCTCCTACACATTCAACTGTCATCAAAACCCTCCAATATGCAAAATCATCGAATATAGACTGCGCATACCATCTATAAGGTCTATCAAGATACCTGATCATATAGTTAAATACTTTGTTCTGAGGTCCATTAGCTCACttgtgaaatttaaaaaaaacatggatatagctagttaaataaatatacattACTGTTTCAACGAAAAGGCTATGTGTGTGGTTGGTTGAACGCCACGCCTCCATTATctgagtgtactgtatgtaccagGGATGCAGCAAGAGTTAAACACCATAATGCATCATGGGACTAAGCCCAACAACCACAAACCACATTCAACCTTAGCTTTGGCACATAAAACAGCTCAGGCTAAATGCACTCTTGTGAGAAAACATATACTGTATCTTTGTGTGCTCGTGCCAATAGAATATTAGGAAACGCCTACTACCCTTTGATGGTTAAGTTGAGTGCTACTGGCACAAAGTGATAGACAGGATACAAAGACAGCCACAGACTCTTTGTTTTACAGCACTCACCTAATCTATAGATGTAGCTATTTCTTCTATTGACAAAATGTCAGATTTTCTCATACAAAGATGCCAAATGACATGTAATGTATAGAACATGTgctttcctttccttcctttaCATAGCGATTCAACCATATCTCCATCTGTGCTTCTTCTGTACAGTACTAGCTGCAGTTGACATGAATTAAGGCGTCGGAGGGAAAGAAACAGGGGATAGTGCATCAATTACATGAAACAGTtctaaaaaacacacacacactcctaggcATCCCCTCAAAGCCCCTGCCAGCCCCTTGCCGACCCCGGCCTGCTCAGTGCAGAGGGCAGCCTCTAGTGGCCACCGCCAGAGTTGCTGCTCCCCGTTGTCCAATCAATGATGATGAAGCTCAAACTCATGATCATGAAGGCGACCCCCAGACCAGCGAAACAGGCGGCCTGGGAGGACAGAGGAAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU693306 True 2327 lncRNA 0.38 3 42056266 42059029

Neighbor

gene id symbol gene type direction distance location
LOC110527780 LOC107554191 coding downstream 130658 41880174 ~ 41925608 (-)
LOC110527779 LOC106582748 coding downstream 182461 41855223 ~ 41873805 (-)
LOC110527778 LOC106582747 coding downstream 201604 41844336 ~ 41861084 (-)
LOC110527777 LOC106582746 coding downstream 212646 41835678 ~ 41843620 (-)
LOC110527776 LOC106582745 coding downstream 221887 41821741 ~ 41834379 (-)
edem1 LOC106582760 coding upstream 709058 42768087 ~ 42773999 (-)
LOC110527792 LOC106565990 coding upstream 716448 42775477 ~ 42793038 (-)
LOC110527110 LOC106582620 coding upstream 746313 42805342 ~ 42815037 (-)
si:ch73-361p23.3 LOC106582621 coding upstream 783684 42842713 ~ 42845808 (-)
cplane2 rsg1 coding upstream 825927 42884956 ~ 42887226 (-)
G608887 NA non-coding downstream 100077 41954174 ~ 41956189 (-)
G608841 NA non-coding downstream 193706 41862269 ~ 41862560 (-)
G608782 NA non-coding downstream 234688 41819143 ~ 41821578 (-)
G608748 NA non-coding downstream 355758 41700297 ~ 41700508 (-)
G608956 NA non-coding upstream 196 42059225 ~ 42059315 (-)
G609094 NA non-coding upstream 198185 42257214 ~ 42257467 (-)
G609129 NA non-coding upstream 230132 42289161 ~ 42289483 (-)
G609141 NA non-coding upstream 242068 42301097 ~ 42301355 (-)
G609757 LOC106582756 non-coding upstream 320178 42379207 ~ 42382376 (-)
G608900 NA other downstream 30562 41968569 ~ 42025704 (-)
G608888 LOC106582750 other downstream 105022 41944571 ~ 41951244 (-)
LOC110527764 LOC106582736 other downstream 707367 41156665 ~ 41348915 (-)
G607932 NA other downstream 892869 41161148 ~ 41163397 (-)
G606973 NA other downstream 1426386 40629249 ~ 40629880 (-)
G610047 NA other upstream 776718 42835747 ~ 42836069 (-)
G610182 NA other upstream 1048098 43107127 ~ 43162969 (-)
G610190 NA other upstream 1054119 43113148 ~ 43116144 (-)
G610183 NA other upstream 1068782 43127811 ~ 43167320 (-)
G610185 NA other upstream 1092541 43151570 ~ 43157089 (-)

Expression


Co-expression Network