G609482


Basic Information

Item Value
gene id G609482
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 42919954 ~ 42922980 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU693885
TTTTTGGGACTTATTTCCTACAATTTGTAGACTAAATACAGAATTCATACATCAAACTCCTGCATAGCTGGATGCTGATGTGACATGCTGTGACTTATTGTGTGGGGGATGTCTTCTACACCCAGAAATATATTCCTTGGGGGGgttattattatttactattaTTGTTATAACTATCAAACTTAACAACCTACTCTTTCTTAATGTACGCTCTGTACATTGCAATGGAAGCAGTGTAATTTCACTGAAGTATGTATAAATTATGAAATTCTCATCACTAGTGGGTATGTTTTTTTAGGATCCCCTTCCGACTGTGATTTTCTTTATCAAAGGAAAACATGCAGCAAATAAGGCAATGGTGGTGCCTATTTCACCTCTCCTGTAGAACGTTCCCATGCCGATGATGTAGAAgattccccccaccccccccaagaAGTCACAGCATGTCACATCAGCATCCAGCTCTGCAGGATCAGGTACTGTATAGGCTATTAGATAAAGTAAGAGGCATTCTTGACACACATCCCTAGATTTTCCGTTACATTATTTAATGACCACAATCTGTTTTCTCAGTAGACTATACTGAAAACAAAATGCACGGCGAACTGTGAGCTGGGTATGtagtctactgtgtgtaatgctgAAGGCTTGATGTATGGAAAGATATAATAGCTGTGATGACTTGTTGAGTAGTTATAGATATCACTGAAAACCCCTTTAGTAATAGTGGCTTTTGTTTGCATGGTGGTATTGTGAAAGTGGGGTGTAATTGTTCTTGATCACCCAATGAGGCACTACTCCTAATATTAATTATTCctttttcttagaggaagcagATCTTCTAAGGGACACCCTAGAGGCACGCCAAAACATTTAAAGGAACCGTTCCCCTCCCTACTGTAATTGGGATAGGCGGGGAAGACCGCATCACAACCCCTAAAGAACTACAGTCACCTGAGTCGCTGATCTCTTTACTGGAGCTGGTATAACTTAATGTACAAAGCCCATTCAGCttgtcagtatgtttatatgatATAGTCTGTCTCCATTCTCATGAGGAAAATAAATGGCATAACTCAGGATAGGTAGTAACTGTATATTTATGTTCAATTAAATAATATAATTACAAAGTTATAACATTCATCAACACAATTTTAACAGTACATGACACGGATAACAAGTATATTGTTCACTGCATCATCAGTAGCTTGCTCAAACTGAGCCCGGCCCAAATTGCACACTGCAGTCAGGGGTACTTGGATTTCGGCGTGTTAtccagtaaaaaatatatatacaaaagtcaGTTGCTAATAAGGAGCTGGTTTCGGCGGGGTTTGTTGCTGATAGCTGGCACTGGGACAAGCGGTAACATATTGCAGTAGTCAGACACGACATGAAGCATCAATATCGTTGGATCCTTCATTTGTTTTTGCACTGATGTTACACAAATGTTTCAGAACAGTCGGCCCTTTAAATGCTACTGTTATATCTAACTAGCTAACGCTACATCCTATCAAACCTGTAGTCTGATGTGTATGGTTAGCCCGCTAGCTAATATAGCCAATGTTAGGGCAAGCAAGGTTAGGACTCTAGCTAGACTGTTGTGCTAGCGACGATGCTAACcgtttagctagcaagctaaacaTTTGGCTAGCTGGCATCAAACATCACGTTAGTTAGGTGAGGGTGAATTACATTATTCAACATATTGCTAGatttctatttaactaggcaagtcagttaaaaccaaattcttatttacaatgacggcctaggaacagtgggtttactggcttgttctggggcagaacgacacatttttaccttgtcaactcggggattcgatctagcagccTTTCAGTTATTgggccaatgctctaaccactaggctacctggataGCCAAATTACTTTATATTTCTAGTTAACTAACAACATCAGCGTAGCTAGTCACATTGGCTAGCAGCAATATTCTGGAGGAAGTGGAAATGCTGATTTGAAAGTGCGAGGTTTCAGATACAATTGATAAAAAGTTGTCACGACGTGGGGCGCTGctgctctgtctcctctcattTACGTGACTCCGCTTCCATCCGGAACTCTCATGTTATTTAGAGGTGTAGCCAGACCTCACCTTGACCTACCCTCGCTTAATCTAGTTGACTTTCCAATAGGGAAAATATGTTTATCCTTGCTCCGTCAGAACAACAGATCTATACGTGCTTTATTTCAAAGGGATATTGTATCCATTCCTTATGTCACAAGTTACTGGAATACATTGGTCactaatatctgttggaaaaaagtctGGTTATTACCACACAAATACTTGCTTGTTAAAAAGGCCAAAGAGGTCTCTCAGAATGATCCATAAGTATTACCCTGCGAATCATTACCTGAAGAAACTCAAAAAGGACATTAACATTGATTGTACTTTTTGTGTTGAGCATCCAGAAACGGTTTCACATTTATTTTGGCATTGTCTACATGTAAAACAATTATGGAAAGATATTCAGTTTTAGAATTGTTAATATTCTTGATTACTTTTGTTTGTTATGGGAGAATGTTCTGCTCGGTTTCCTTAACCGTGATAAAGAAAAACTATTTTACTTCATAAATCTAATTGTGCTAatggcaaaatgtcttaaaacACTCTTCCGTGTTTTCTATAAGGAATTTGAGCAGTACATTAAGACCATTTTACATTCTTCTAATAAGAAAGCTGTTAAAAGAATCAATATGTGTGTTTCTTTTAAGGTCTTTGTATAATTTGTCATTTGTTGTACCCCCT

Function

NR:

description
uncharacterized protein LOC109964271

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU693885 True 2790 lncRNA 0.39 2 42919954 42922980

Neighbor

gene id symbol gene type direction distance location
LOC110527794 LOC106582762 coding upstream 36274 42854920 ~ 42883680 (+)
gnat1 LOC106582761 coding upstream 152558 42760386 ~ 42767396 (+)
LOC110527789 LOC106565988 coding upstream 160550 42685145 ~ 42759404 (+)
LOC110527788 LOC106582758 coding upstream 389572 42513096 ~ 42530382 (+)
camkva LOC106582757 coding upstream 419039 42461967 ~ 42500915 (+)
LOC110527799 LOC106582765 coding downstream 567 42923547 ~ 42930634 (+)
rbp7b LOC106582767 coding downstream 10003 42932983 ~ 42935248 (+)
LOC110527804 cssa22h3orf18 coding downstream 62680 42985660 ~ 42991364 (+)
LOC110527808 ab14b coding downstream 104944 43027924 ~ 43035211 (+)
LOC110527818 NA coding downstream 601707 43524687 ~ 43526668 (+)
G609486 NA non-coding upstream 432 42919218 ~ 42919522 (+)
G609504 NA non-coding upstream 3450 42915831 ~ 42916504 (+)
G609489 NA non-coding upstream 29386 42890026 ~ 42890568 (+)
G609457 NA non-coding upstream 72060 42847466 ~ 42847894 (+)
G609449 NA non-coding upstream 82694 42836851 ~ 42837260 (+)
G609511 NA non-coding downstream 19751 42942731 ~ 42943096 (+)
G609440 LOC106582768 non-coding downstream 22249 42945229 ~ 42952239 (+)
G609512 NA non-coding downstream 30692 42953672 ~ 42953951 (+)
G609506 NA non-coding downstream 37440 42960420 ~ 42962095 (+)
G609487 NA non-coding downstream 60726 42983706 ~ 42984145 (+)
G609436 NA other upstream 98709 42820956 ~ 42821245 (+)
G608390 LOC106582745 other upstream 1089146 41827211 ~ 41830808 (+)
G607904 NA other upstream 1456785 41462824 ~ 41463169 (+)
G606977 NA other upstream 2285515 40634181 ~ 40634439 (+)
LOC110527751 NA other upstream 2479322 40438879 ~ 40457742 (+)
G610436 NA other downstream 487411 43410391 ~ 43410806 (+)
G610563 LOC106582806 other downstream 661040 43584020 ~ 43584896 (+)
G610622 NA other downstream 906024 43829004 ~ 43831880 (+)
si:dkey-264d12.5 LOC106582817 other downstream 1079644 44002556 ~ 44035143 (+)
G613664 NA other downstream 3355754 46278734 ~ 46279333 (+)

Expression


Co-expression Network