G609440 (LOC106582768)


Basic Information

Item Value
gene id G609440
gene name LOC106582768
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 42945229 ~ 42952239 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU693839
CAACAAGTGGTACAGTGAGAATATATTCATTGGCTGAAATGTTTAGAGCACGGTTCCAACTTCATCTCCCCAACAGGTTATACTAAAAAAATCTGTTCAATAAAAAATTATTATTAAAAGGACAACTGGTGTTTCCATTTAGCTTCATTTCGACACATGCCATAACATCCTTTATGGACAGGACACTATTTCCCAGTGTGCAAGTCTGAAATAACATAACCTGTTCATTATTTGTCTTATGTCCCAAAGAATACATCAGACATAAATTACTCCTCTGCCCAAATAATGCATTCGCTTTAATTTAAAATGAAGcccattgaaaaaaataaaaaccttggTTATGTCTGACAGAATAGATCATAAATGTATCCAAACTTACTACCCAATTCTGACTCCTTTTAAGTTGGCATAAATCTAAGAGGCCCCATTTCAAGCCTGTGAGGACTTCTGTCTTCATCCTTCAGGACACTGACTCCGGTCTGGGTTCAGATGCAAACCTCGGTCAGCAGTGTCCAAGGTCCCGTCTCTTAGAACATGCGGAGTGAAGCCGTTCTTTGATGGCAAAGCATTTATAGATGGAAGAGAGTGATATTGACATCACCCAAAGAATGCTGCCAAAGAGGAGCTTCTTCCCGGGAAAATGGAAGAGAGGTGAACTGCAGAAGAGATTGTAGTGAAGGCTTTTCCATTTAACTAGAGACTGAAAATAAAGTTGCACTTAAAACATTTACGTTTCAACCAGATTCTTTCCAATGCAAGATTGTTGTCAAATATACAGATGGATAGTGAACCAGTGATTTCTCATGCATTCAGAAACATCACAACTCACAATGCATGCATCAAAGAATCCAGTTGAAAATAAGTCAGGATATAACAAACTTAAGAACAAATCAATTTGACTTCAAAAGTAGCACGACTCTGGTAAACAATAATTCATTTCAAACACTTTCTAAATTAAAATCTTGATCTCCAAATGTACAAAACAGCCTTCACAAAAGCGTTTAAGTATCAGATACGCATAACACCAGAAATAAATTAGGAAAAAGACCTCACAATACTTACCATCAAACTATTTCACATACCCCACCCGGAAGACTTGGACTCCATACTGGAGCCAAATCCTGAGCTAAACCCACTACCACTGGCTGTTGCGTTAGAACCGGTACCCCAACCTAGACTGGCTGAGTTGGTGCCGTAGTTACTGTTGCCTGTGCTGTAGGCCTGGCTCTGATCCCTGGTGGAGTTAGTCTGCCCAGTGGAGGTGGTGCCTGAGGTGGCAGTTTGCCCTTGCTGACTAGCCAACATACCCATCATTCCCCAACTGCTCTGTAGGGCAGCCTGAGCAGCAGCCATCATGGCAGGGTTCAGACTAAAGTTCCCAAAATTAGCCATATTACTACTGGCGCTGGTCCCTAACCCTGTGCGGTTACTACCAAAGCCCTGAGCCCCAAACCCGTTCCCAAACCGCCCTGCTCGCTCCGTCATCTGCCTACTGCCGTGTTTTGGCTCAGCATTTGAGATGTGCACGCTGACCCCCTTAATAATCAGGTCCTCTCCACATAGGGAACTGGCAACCTGGTCATCGGCAAAGCTGACGAAGGCAAAGGCACGGAAGGGCTTGGGGATGAAGACGTCAGTGACCTCACCATACTGCATGAAGAACTGTCGCAGTTCATCAGCGGACAAGTCTTCAGTGCAACGGCCTACAAACACTTTTCTGCTTCTCATGGGCTCATCTGGACCTTGCTTGGAGTTGGGGAGTTTGCAGTCACACCATCTTCCATCAATCATGTGGCGTTGTGAGATCACTTTGTCTTGAGTCTCATACTCAGTAAACCTCACAAAGCCAAACCCCTTTGAGTTTCCAGTCTTCACATCTCGTTTCACCTGCACCATGATGACTTCCCCAAAGGTGCTGAAGTAATCTTTCAGGTCCTGTTCAGTTGTCTTCCATGGCAACCCCAGTACAATCAGATCAGATGTCTTCATGTCACCTCTCTTCATCTTCACAGCAGAGGCGGCATCAATCTCGTCCATTTTCCTTTTATTGTCTTTGGGATAATTGACGACATAGACCAGATTGCCCCAGCCGTTCTCAGGCGCATGAAGAATCCCTTCCACCAAACGGACCCCTCTCATACACTGTGAAACAGGACTCCTGAATCGTAGGCCGCAGGCCCCAGGAAACTGAGCTGCCACGGTAGAAAGCAACACAGAGCCATCGTCCTCAGAAGGGATCTCCATGGGCTCCTCATTCTCTTCTTCGGCCACACGAATGTACAACTCTGCCATTTGTACCTACAATTACGCCTTTTCTCAGTCAAAAATACTGCACTGGCTATGTAAAATTAGCTCTCTACCCACTTCGATATGCCCGACGACTAGTTgattaatacaaaaaaaaaatagttcCGAAAATACACCGCGGTTTATAAAAAATAAGTCAGTTTAGACGTTGGACGTTGCttaaatgaaattgtatttaaaCGACTAACTAGATCTCGTGAGATTTTCAAGCAAACGAACCTGCCTCGGTCCCACTCCGTGTTCCTTTGTTAGCTTGCTCTGTCATCTACACCGGACGACCTAGCTTTAGCAATGGAGCTTTTAGTGAGCTAACGGCGTTTCGTGCCGTGTTGGTCCTAACAGTTGAAATTTCGTCCAAGTAATTTGAAATCGAGCAATCGTATAATTAACGTTAAGTCTTAACTAATATTTTCTAAAGTAGCATACACGTAATACTGCGCGTTTAGAGCAAATATTCAACCTCAAACACACCTGCGACGAAAATAAACACGCTATTCTTTC

Function

NR:

description
TAR DNA-binding protein 43-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU693839 True 2808 lncRNA 0.44 6 42945229 42952239

Neighbor

gene id symbol gene type direction distance location
rbp7b LOC106582767 coding upstream 9981 42932983 ~ 42935248 (+)
LOC110527799 LOC106582765 coding upstream 14595 42923547 ~ 42930634 (+)
LOC110527794 LOC106582762 coding upstream 61549 42854920 ~ 42883680 (+)
gnat1 LOC106582761 coding upstream 177833 42760386 ~ 42767396 (+)
LOC110527789 LOC106565988 coding upstream 185825 42685145 ~ 42759404 (+)
LOC110527804 cssa22h3orf18 coding downstream 33421 42985660 ~ 42991364 (+)
LOC110527808 ab14b coding downstream 75685 43027924 ~ 43035211 (+)
LOC110527818 NA coding downstream 572448 43524687 ~ 43526668 (+)
LOC110528952 NA coding downstream 574692 43526931 ~ 43529047 (+)
mon1bb LOC106582805 coding downstream 584758 43536997 ~ 43545817 (+)
G609511 NA non-coding upstream 2133 42942731 ~ 42943096 (+)
G609482 NA non-coding upstream 22249 42919954 ~ 42922980 (+)
G609486 NA non-coding upstream 25707 42919218 ~ 42919522 (+)
G609504 NA non-coding upstream 28725 42915831 ~ 42916504 (+)
G609489 NA non-coding upstream 54661 42890026 ~ 42890568 (+)
G609512 NA non-coding downstream 1433 42953672 ~ 42953951 (+)
G609506 NA non-coding downstream 8181 42960420 ~ 42962095 (+)
G609487 NA non-coding downstream 31467 42983706 ~ 42984145 (+)
G609484 NA non-coding downstream 39211 42991450 ~ 42995182 (+)
G609533 NA non-coding downstream 57305 43009544 ~ 43014662 (+)
G609436 NA other upstream 123984 42820956 ~ 42821245 (+)
G608390 LOC106582745 other upstream 1114421 41827211 ~ 41830808 (+)
G607904 NA other upstream 1482060 41462824 ~ 41463169 (+)
G606977 NA other upstream 2310790 40634181 ~ 40634439 (+)
LOC110527751 NA other upstream 2504597 40438879 ~ 40457742 (+)
G610436 NA other downstream 458152 43410391 ~ 43410806 (+)
G610563 LOC106582806 other downstream 631781 43584020 ~ 43584896 (+)
G610622 NA other downstream 876765 43829004 ~ 43831880 (+)
si:dkey-264d12.5 LOC106582817 other downstream 1050385 44002556 ~ 44035143 (+)
G613664 NA other downstream 3326495 46278734 ~ 46279333 (+)

Expression


Co-expression Network