G609484


Basic Information

Item Value
gene id G609484
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 42991450 ~ 42995182 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU693887
TGTGAACCTTTTTATTGGTAACAGAAAGACCAAGTAGCACCTCTAAACTCATGCAAACACACAATGAAGCGAGACAGATCAGAGTCAAATTAGAAAACAGCCATTTGAGTTGTGTATTCAAGTTCAAATGGATTGAAATCTAAAATAAATCAAACAATATATGAAAGACTAAAATAAAAAAGGGAGACCTTTTCATCGATCGCAAACACAAAAAAAGATTACAACTGGAGATGTTACAAGATAAGAAAACCTAACTACtctattcaatattttttttaaactcatacATAAAGCATAACAACAAGTACATGAAATAAACTCCTAAAATATTTATACTGAATATATCAATATCAGTCAGCTCATTTAGAGCAACACTGTGATTAAAATATAGATAGTGGCTATCCTGACATTGCTGAGGTATGACTGTGGTTAGGTTAGGAGGCACTCTTACTGACATCATAGTACAGTACTTTGGGTTTATttacctacagatgtaggatcttaatttgatccagtttgctacagcagaaacataatcctgcagcaacaagaaatgtgaattattatgtggattacatTTTTGTAaggtttgatacatttttcattagggcaaatcaagtctgaaatttcaaagtggaattcACAACCTTAGAAGCCTTTTTCAATCTCATATACTACAAGTTTGCAGTGCAGGAAAAAATCTCAGCAACAAAAATATGataaaattaagatcctacatctatatacagtatgctgTTACGGACAAAGTGAGGTGAGTGGACCTCTGATATAGTTGTCCCATAGCTATGGTAAGACTGCAGGGGACAAGCAAAGCTAAAACCAGCCAGTCACCCCTCTGAGGGCCAAAGCAGACTAGTTTCAGAGGTAGTCCACAGCGCAAACAGTGATGCCATCCAAAGAGGTGAAGTAACAAGAGAAAAAGTATAGGTTGGAAAAGACTCACAGACATACTAACTTGCAACTGACAGAAAACTAAACGCTTGAACCTTCCCTAGAAAAAGATTGCACGTGGATAAGTCCACGCACTCCAGAAATACATTACAGTAAGATCCAAAACAAAGTGTTAACTCACTATTTCACGTCACTTCACTGACATCAGTTCAACTAATGTTAGGATTGTTAATGCAACACATCTGTAGTGTGAAAGTGAAAGCTTGAAATGAAGTAATGATCGCATGGTATCTTACGTAAAAAGTGAAGAGAGGGAAAAATGTAAGGGCTCACAGAGGTCGTGATAAAACAATAAAAAAGAAAGTCATGAGTAAGTAACCAACTACAGTAAACAGTAAAATATTGGGTCATTTTGAACCCAGGTAGATAGACCAAGGCCTCGATTCAATCAGATCGAGTGTTACCCCACGTTAGCCGACATCCGCATAGGGGATGTTTTGGCAGTGTTAGAGGTCCAGTATTACTACGGTAGGAGCTAACTAATCATGTGTGTCACCAACCCTTCCCTTCCTTATTATCCCTATCCCTGCGTTAGCCCAAAAAGGCGATAGAAAGTGTAGGCTCTATCCATGATAGAAATGATCCATGATAGATCTGTTGGATATAATGTCGGGTGTGGTTTCGTTCCATCTAATGGCAGTGTCCGCGATAAGGTAACTCAGggagccgcttgtggatttgacagctccaacgcaGTTCCACCTCCAAAAACAACCGCAATGTGAATCTAGCACGGATCTGATAGAATCTAGACCCAAGTCTTATCTCAGATATTTCATCAGAGCATTACCACTAAAGGCTGCTGCTGGGACCCGCTTAAAGAGTCAGTCAGCATGGAAGTGGAAGTGAGAGTGTGAGGCTAGTGGGTACAGTGTGTATGGGATTGTcctgagtaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctttgtttgttttttttggtaTGGGGAGAGGCTATAAAGAGTTCTCTGCTTTTCTGTGACTGAGGTAGACTGAAAGGCAAAGGAACTGAGGTGAGTTATGGTCTTAATGAGGTTTATGTGTGTCAAGTAATATTGTGAATGTCAAAAACAGATCAGAAATACACAATAAAAATGGAATAATATCATAACTGAGTAGAATAACACATGAATCACACCTGAATAGCTATGCACATAGCCATATTAAGTCAAACAATACCCGGGGGCCATACTTGTGAACAATAGAACAGGTTGAAGTTTTAGTTTAAgcatcagccaattaaaatcgTTGATGTAGTTGTACGTGATCAAAGGCTACATGTTAGCTGTTCCCATTACATAACCTGACACATGCTAAGCTCACCAGGTGGCTGtatatatgtgtatttatatCTGGTTGAAATTCTGTATCAGCTAATCAAAATACGTATTTGGACATTATCCAACACTTGTCCATGGAAGCGCCCTTAACAGAAGTCAAATGGCAGGATCTGCTATTCAAAGTTGCTGGATCAACACAAGCAACCTCAAGTGGACAATTAGCTCACAGTGTCGCCAGCCTGGTTCCTGGTACCATTTGCCGTTTGCGGCAAGCTTGAATCCCAGGGGAGATAATGTTTTTTCCTTTGAAATGAAAGAATGACATTTATTGTGATAGTGTGTAGTGCAGCCAGAACCTTGTAAATTAAGATTTACAAATATCTTTAATGAGGAACTTTTTGGTGTCCCTCTTGCAGACCGACACGTAGGCTACTGCTACTCATGGGGTGTAGTGCTGCCAGTGCCAGAACAGCGCTCCACCAGGAGGTTTAAATATATCCCTCTGGGCATATATTTTAAGAAATGCCATTGGTTTGTGTAGAAAAAGTTTAAGATCTTTGATAGGCAGATGCAGGATTTGTTACAGGAAATAATCACTGCCACCTGGTgaggttagcatagggctaaaTGTGCCAGGTTATTTAATGGGAACAGCCAACGTGTAGCATTTGATCATATCCAACTATGTCAACAATTTAAATTGGCAGATGCTTAAGCTTGAACAAAAACTTGTTCTAACGTTCGCAAGTATGGCCCCCTAAGGTTTTATTGAGTGTGGTTAGAGCAATGTAGTAAAAACAAAACCTGATGTGTGATGTGAAGTCATGTCACTGTTGAGTTCAGACTTCTGAATTCTGTTCACGATCATGTATTCCCATTCCAACGTATATCTAACAAAATATCCCTGTGTTTCTTCACAATCAGGACAGACAATTACGTTTGAGCCGAGCTCCTGTGTGACAATAGGGTCAAATGGGTCATGAATTTTGTCCAGGTAATGTGTTTTGAAATGTCAGTCACATTTGATGACAGCAACTGcatcttttatttgtatttttaaaccCTCCCCACCATTAACACCAcaaacgcatacacacacgcacgcatgcacacgcacacgtcAACCAATCAGTGAACAGCCCCACCCACTGACCGAATCCTAAGTAATCAATCAACTGACCAAAGCTATGTCCATCATTGACCCAGCCTCAGTGCTGGACAGACTCCAGTCACAATACCACCATCAGGCCTACTGTTCTACAAAGCAGGGCTATTATCTGTTGTTTTTGGAATCCTCATGACAATGGAGGTTAGATTGTACACCTCTTTGTCTCTGCCCAAACCTTGAGGTAGTTTTGTGGCACATTGTCTACTCCCCCTCTGCCACTTCCTGGGCTGGAGCCTGAGATGGCGAAGCCTCAGCGGACAGAGACTGTGAGGGGCCCTCAGTTTCTTCTGAA

Function

NR:

description
nucleotide-binding oligomerization domain-containing protein 2 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU693887 True 3733 lncRNA 0.40 1 42991450 42995182

Neighbor

gene id symbol gene type direction distance location
LOC110527804 cssa22h3orf18 coding upstream 86 42985660 ~ 42991364 (+)
rbp7b LOC106582767 coding upstream 56202 42932983 ~ 42935248 (+)
LOC110527799 LOC106582765 coding upstream 60816 42923547 ~ 42930634 (+)
LOC110527794 LOC106582762 coding upstream 107770 42854920 ~ 42883680 (+)
gnat1 LOC106582761 coding upstream 224054 42760386 ~ 42767396 (+)
LOC110527808 ab14b coding downstream 32742 43027924 ~ 43035211 (+)
LOC110527818 NA coding downstream 529505 43524687 ~ 43526668 (+)
LOC110528952 NA coding downstream 531749 43526931 ~ 43529047 (+)
mon1bb LOC106582805 coding downstream 541815 43536997 ~ 43545817 (+)
si:dkey-183j2.10 LOC106582807 coding downstream 572478 43567660 ~ 43582311 (+)
G609487 NA non-coding upstream 7305 42983706 ~ 42984145 (+)
G609506 NA non-coding upstream 29355 42960420 ~ 42962095 (+)
G609512 NA non-coding upstream 37499 42953672 ~ 42953951 (+)
G609440 LOC106582768 non-coding upstream 39211 42945229 ~ 42952239 (+)
G609511 NA non-coding upstream 48354 42942731 ~ 42943096 (+)
G609533 NA non-coding downstream 14362 43009544 ~ 43014662 (+)
G609532 NA non-coding downstream 22712 43017894 ~ 43020900 (+)
G609542 NA non-coding downstream 52695 43047877 ~ 43049711 (+)
G609573 NA non-coding downstream 111733 43106915 ~ 43167294 (+)
G609582 NA non-coding downstream 174101 43169283 ~ 43170138 (+)
G609436 NA other upstream 170205 42820956 ~ 42821245 (+)
G608390 LOC106582745 other upstream 1160642 41827211 ~ 41830808 (+)
G607904 NA other upstream 1528281 41462824 ~ 41463169 (+)
G606977 NA other upstream 2357011 40634181 ~ 40634439 (+)
LOC110527751 NA other upstream 2550818 40438879 ~ 40457742 (+)
G610436 NA other downstream 415209 43410391 ~ 43410806 (+)
G610563 LOC106582806 other downstream 588838 43584020 ~ 43584896 (+)
G610622 NA other downstream 833822 43829004 ~ 43831880 (+)
si:dkey-264d12.5 LOC106582817 other downstream 1007442 44002556 ~ 44035143 (+)
G613664 NA other downstream 3283552 46278734 ~ 46279333 (+)

Expression


Co-expression Network