G609532


Basic Information

Item Value
gene id G609532
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 43017894 ~ 43020900 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU693936
TGAGACTGACCTGTCTCTGAGGCTGACTGTCCAGGGAGAGTTTCCAGGACGCCCACCAACAATACGGAGTATGCTCTTGACGAAACGATCATCTCTCTTCCCACACTCATTAAACTCCACTTTCTCtgtgcgcacacagacacacacacacacacacacacacacacacacacacacacacacagacacacacacacacacacacacacacacacacacacacacacacacacacacttcagttaGCGAGTAAAGTTGTGTACACAGGTACACTTCCAGGAAGCACTTATTATTCATTATAGTTGCATATTCCATTAGGAACTCACCGGCTGGCTCAATGATGGACACTTTCTCCCCAGCTGTTCAAACAACAATAAGCAgaatcattttttaaaaataattttgaAATAACAGCCAAGGAGGGATTAGTGCTTCGAGCAAAATGTATGAAAAGAGCTTTATAGTGTTAGTAAATTAACATTAGACCTAGAAGGATAGAGTACAGAGTATAAGATATACTGGCGGTGTCCGAAATCTGTCTTGCCGACTACTTACTAAAACGACATAATGTGTACTAATCATACTCATACATATACTATTTAGAAAGTACTGTTTGGTAAAACAGATGCAGTAAGCAATAAATATCAACATACTAGGCTCACCCATCCTGATAACGCGGCATCTAATGCGCAAGTGCGTTGATTCCCACCATTTGTTCATTTGGGTACAGCGTGTCCCCTTGTCTCATTATCAGCTTATCATCATGTTATAAAATGTTCTATTTTCGCATACCTAAAATGCCTACTGTGTAGAACGAAAGTATGGGAATTCGGATACGGCCAATGAGTGATGGAGTAACAAGAGAAAGATATGGAGAAAGGAATGTAATGCCTGAGGGGACAgaggtatgggggggggggggggggggggggggtcggaatCTTTACCGCACTGCTTGATGGCGCAGTAGTCAAACTCTGTTTTGGGGTCAGTGGTGTAGCACCAGGGTCCGTGTTGGTCCCCATCTGGGTTCCGGCAGTAGTTCTCTGTCAGGTTGCCCTCAGGGTGGGTCCCTGGGTTTATCCTGGAAAACCACAGTGCAGTAACAGCACTAAACCTACCTACCAAGGCCACAGCAGACACTTCTACACCCACATGCTACTATCCCATACATTgaagtatatatacacacagtaccagtcaaaagtctcgacacacctactcattcaagggtttttctttattttgactattttcctcattgtagaataatagtgaagacatcacaactatgaaataacaaatatggaatcatgtagtaaccagaaaagtgttaaacaaatcaaaatatattttagattcttcaaagtagccaccctttgccttgatgacagctttgcacactcttggcattctctcaaccagcttcacgaggtagtcccctggaatgcatttcaatgaacaagTGTACCTTGTTACATTTTGGgggggaatttctttccttcttaatgcgtttgagccaattagttgagttgtgacaaggtagcagtggtatacagaagattgtcctttttggtaaaagaccaagtccatattatggcaagaacagctcaaataagcaaagagcaaagagaaacgacagtccatcattactttaagtcatgaaagtgcagtcgcaaaaacgatcaagcgctatgatgaaactggctctcatgaggaccgccacaggaaaggaagacccagagttacctctgctgcagaggacaagttcattagagttactagcctcagaaattgcatccaaaataaatgattcacagagttcaagtaacagacacatgtcaacatcaactgtttgaatcaggccttcatggtcgaattgctgaaaagaaaccactactaatggacaccaataataagaagagacttgcttgggccaagaaacatgagcaatggacattagaccggtggaaatctgtcctttggtctggagccCAGATatgagatttttagttccaaccgccatgtctttgtgagacgcagtgtaggtgaacggatgatctccgcatgtgtagttcccaccgtgaagcatggaggaggaggtgtgattgtgtgggtatCACATTTCatgtaagacccagatgcagacagtgtcgaagtaacaaaggTTTATTATTagtacaggggcaggcaaaacgacaggtcaagggcaagCAGAGATCAGTAGGGTGCAAAaagtccagaacggcaggcagtctcagggtcagagaaggcagaatggtcaaaaccaggaaaaacaagaaaacaggaactagaacagacaggagcaaggggaaaaacgctggtaggtAAACAAAAATTAActggaaacagacaaacagagaacacaggtataaatacactggggataatggggaagattggTGACacttggaggggggtggagacaagcacaaagacaggtgaaacagatcagggtgtgacagtgggggtgcttttctggtgacactgatttatttagaattcaaggcacgcttaaccagcatggctaccatagcattctgcagcgatacgccatcccatctggtttgggcttagtgggactatcatttgttttttaataggacaatgacccaacacacctccaggttgtgcaAGGgttaagatggagagtgatggagtgctgcatcagatgacctgacctccacaatcatccgaactcaacccaattgagatggtttgggatgagttggaccgcagagagaaggaaaagcagccaacaagtgctcagcatatgtgggaacgccttcaagactgttgaaaaataattccagatgaagctgattgagagaatgccaagagtgtgcaagctgtcatcaaggcaaagggtggctattttgaagaatctcaaatataaaatacattgatgatttgtttaacactcttttggttactacattat

Function

NR:

description
Transposable element Tc1 transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU693936 True 2962 lncRNA 0.43 2 43017894 43020900

Neighbor

gene id symbol gene type direction distance location
LOC110527804 cssa22h3orf18 coding upstream 26530 42985660 ~ 42991364 (+)
rbp7b LOC106582767 coding upstream 82646 42932983 ~ 42935248 (+)
LOC110527799 LOC106582765 coding upstream 87260 42923547 ~ 42930634 (+)
LOC110527794 LOC106582762 coding upstream 134214 42854920 ~ 42883680 (+)
gnat1 LOC106582761 coding upstream 250498 42760386 ~ 42767396 (+)
LOC110527808 ab14b coding downstream 7024 43027924 ~ 43035211 (+)
LOC110527818 NA coding downstream 503787 43524687 ~ 43526668 (+)
LOC110528952 NA coding downstream 506031 43526931 ~ 43529047 (+)
mon1bb LOC106582805 coding downstream 516097 43536997 ~ 43545817 (+)
si:dkey-183j2.10 LOC106582807 coding downstream 546760 43567660 ~ 43582311 (+)
G609533 NA non-coding upstream 3232 43009544 ~ 43014662 (+)
G609484 NA non-coding upstream 22712 42991450 ~ 42995182 (+)
G609487 NA non-coding upstream 33749 42983706 ~ 42984145 (+)
G609506 NA non-coding upstream 55799 42960420 ~ 42962095 (+)
G609512 NA non-coding upstream 63943 42953672 ~ 42953951 (+)
G609542 NA non-coding downstream 26977 43047877 ~ 43049711 (+)
G609573 NA non-coding downstream 86015 43106915 ~ 43167294 (+)
G609582 NA non-coding downstream 148383 43169283 ~ 43170138 (+)
G609642 NA non-coding downstream 241212 43262112 ~ 43262462 (+)
G610332 NA non-coding downstream 317052 43337952 ~ 43338163 (+)
G609436 NA other upstream 196649 42820956 ~ 42821245 (+)
G608390 LOC106582745 other upstream 1187086 41827211 ~ 41830808 (+)
G607904 NA other upstream 1554725 41462824 ~ 41463169 (+)
G606977 NA other upstream 2383455 40634181 ~ 40634439 (+)
LOC110527751 NA other upstream 2577262 40438879 ~ 40457742 (+)
G610436 NA other downstream 389491 43410391 ~ 43410806 (+)
G610563 LOC106582806 other downstream 563120 43584020 ~ 43584896 (+)
G610622 NA other downstream 808104 43829004 ~ 43831880 (+)
si:dkey-264d12.5 LOC106582817 other downstream 981724 44002556 ~ 44035143 (+)
G613664 NA other downstream 3257834 46278734 ~ 46279333 (+)

Expression


Co-expression Network