XLOC_025382


Basic Information

Item Value
gene id XLOC_025382
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 26355294 ~ 26361798 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052676
TGTAgttctatataaaaataaaaaaatgcaaaaatataaaattgtgaagtgcatttataaactaatttcgagaggatcatgtgcttatgattgaccacggctggtcccacattagctaacgcatgattcaccaatcggaTGATTCCttactcactataaataaccagagtttcttacctcagtcATCTTTGTCTTGTAAAATCCCCCTTTCtacccctactcctccaccttttCATTGATAGGGCGGCacagcagcccagtggttagcattgttgcctcacagcaagaatgtcagtGGTTCAAGTATTTACCAGGCCaattgacgtttctgtgtggagtttacatgttctccccatgctcttGTGGGTTTCTCTGGCttctccccacagtccaaagacatgtgtcatAGTCTAGCGTAGCAGTACCGGACTCTCTCAGCTCGGGACGAGACAGCAGGCGCCCTGTAGAGACCCAGCAGAGGACAGAAGGCCAGCCCTCCTGCCTGTCAGAGAACCATATTGTCGGCATTAGCTGAAATGGCCGGTTTGGCCGGGCCGAGCGCCGAGCTGATGAGTCAATTAGCACAATGGCAGTGGAAGGGCAGCCGGCCCTCCTGTTCATCTCGGAGAGGTTGAAACCAAACCAGGAGCTAATCATCATCATTTATGAATGAAGGTAGGTGAGGTGGCATTTCATATGATGCTGGAGGTGAGAGTGAGGGAGCTGAGCGGTGAGGAGAGCTGTTTACAGAGGCAGAGGGCCCGTCTGGACCTGAGGTGATGTTCAGGACGTGGGCAGACTGCGAGGGCTGAACAGAGCAGCTCTGTGGACCTCACGAAACACTGGTGAGAGCTTGTTTTTCTGTGAGAGGCGTGTGAGTAAACAGCCTCTCACCATCCAAGACTCAGACAGTTTGACAGTTTGTTTCAAATGGATTCTTGTCTTGAAGAAGGTATTTGCGCTCCATACTTGTGAAAAACAGGCATCGTGGGATCGAGTGGATGCTGTTTTATGAGCAGGTCCTTGCATTACAAAGGCTTTCTTTCATCCATTTGTCACTGATTGTAGTCTTCTGAAATAGACTACTAAGTAAACTGGCTGAATTGTTGTTTAAAGGAAAGTTCATTGCACACATTATTTTTAAACGTTGATTTCAGACTTTCATTGCAATCTGAACATTCTGAATTCAATTATAAGAagatttgaatttttattttaattgtccccctttttatttatttaaatagtcaaAAAGCATACATTATTTAATCAACATAACTAACAGCACAACATAAATATCAACACAGTGCTTTAACATTGTGCACatataaac

Function

GO:

id name namespace
GO:0043023 ribosomal large subunit binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052676 True 1333 lncRNA 0.44 2 26355294 26361798

Neighbor

gene id symbol gene type direction distance location
XLOC_025381 rps15a coding upstream 3638 26345732 ~ 26351656 (+)
XLOC_025380 si:ch211-156b7.4 coding upstream 11646 26342768 ~ 26343648 (+)
XLOC_025379 si:ch211-156b7.5 coding upstream 28531 26322596 ~ 26326763 (+)
XLOC_025378 rhot1a coding upstream 35536 26288981 ~ 26319758 (+)
XLOC_025377 adap2 coding upstream 73733 26267725 ~ 26281561 (+)
XLOC_025383 NA coding downstream 49435 26411233 ~ 26416784 (+)
XLOC_025384 NA coding downstream 274022 26635820 ~ 26636398 (+)
XLOC_025385 tmc5 coding downstream 372364 26734162 ~ 26751819 (+)
XLOC_025386 socs1a coding downstream 451260 26813058 ~ 26814953 (+)
XLOC_025387 dexi coding downstream 543226 26905024 ~ 26906351 (+)
XLOC_025429 BX649540.1 misc downstream 3886941 30248739 ~ 30249036 (+)
XLOC_025374 FP016144.1 non-coding upstream 160835 26194344 ~ 26194459 (+)
XLOC_025371 NA non-coding upstream 274894 26076494 ~ 26080400 (+)
XLOC_025364 NA non-coding upstream 368350 25985339 ~ 25986944 (+)
XLOC_025360 FP101990.1 non-coding upstream 509966 25844151 ~ 25845328 (+)
XLOC_025358 BX120006.1 non-coding upstream 601745 25752221 ~ 25753549 (+)
XLOC_025390 NA non-coding downstream 932510 27294308 ~ 27343689 (+)
XLOC_025391 NA non-coding downstream 985041 27346839 ~ 27494805 (+)
XLOC_025392 BX000529.1 non-coding downstream 1045298 27407096 ~ 27407211 (+)

Expression


Co-expression Network