XLOC_025383


Basic Information

Item Value
gene id XLOC_025383
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 26411233 ~ 26416784 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052677
AATGACCATCTTTACCAATGGGCCATTGACTTGAATTGTTCATAAACGCTGATCCATGCATTAATGAAACACTGTGACTAATCCCTCCATACTGCCCCACATGATACTGTAGTCATGACAAAAACGCATCATACCTGCTGAGATGAtaaaggagatttttttttattgaaaaattcaGTATGAAGAAAAGAACAGCAAAACTGAAAGAACATTGATACAGAAGGCATttacaacagcagtttttttttggttttcgtGGAGAAATGAAAGATACGACAGAGACGACATGTTGGATGCTTACAGACACAAAGGTTGGGAACAACAGCTAAGGCACAGAGGTCCCCTCCGACCCAAGAGTTCAAAGAAATTGTGCAACAGTTGCTCAACAAAACATTCCAGCACAGAGAACAGCAATCTGGCATGAGATTCTCCGAAAGgcaaaaaaatattcattaagaGCTGAACCACACACTCAGACGAGCACAGCCCTTCACAAACCCCTTCACATCAAAACACACCATAAACCTCCTCCACTTTGACACTTCTTGTTAAAAACGAGGTTATTTACAATACTTTATGAACATCAGTCCAATACAAAATACTTTACATTGTCATTCCTACCAAAATAGCTATAGTACAGAAGAGATGTCTGACTGATGTGGTAATAAATAGCATTTCCGTGTGAACGTTACAATAGACATTTCAGTTGTGTGAAAGAAAGAGGTATGTTCTTGTGTCCGTGAGCTCTGATTCAACCACTGCAGTTATCTTAAGGGgataaaaatgaaaagtctgtcatcatttgtGATGATATTTTctttcatacattttatttttgctcaTAAAATGTGGGCTTTAAACAGgacttgacattaacacctgccaaatgcTGGTAGATTTCAGCAGTGGTTAGACAGAGGCTCCCACTTGCCCCTTTGGCtggttataaataatttttaactactatttagttttagttacatgagaataactttttttaatggcattgttgaataaaaagtttttgtATATTACTTATGGTCTGATTGATTGGCTGAAGATCGGTATCGGCTGATAATCATATTTCACGACTTGATCAGTCCTCGCTGATCTCGCCGATCTCATGAACTGACCGCAAGTGTTTGATTACGAGTTTACAACCCGGGTTATACATCCACAGTGCTACAACAtgtgagcaatgtttccaaattgcattgtcaaTAATGTTTCTTACCAAatttttctctttctttaatctattatttttttgtaaagctgcttatgACCATTACATGCATgcaacatccttcatttattcgcTTAGACAAGAAGATATCTCATAAATAGAGGGACAATAATGCTTACGCAATGGGaaagttatataaagcttgaagcatcagaattgggaCTTGGTTTTGGCTGATCACAatgacaaggaattggtactccgtatcggctgcaaaaatcctgaacAGAGCATCCCTATTGTATACAGTATTGTATAaaaagtgtgtatatattttgcttgttttgacacattattttaaatttgtggcaaggaaataattagtttggtgttGCTAGAGAGAAATTAGGTTAATCCATAGTGCTGAGCCCTAAAAAGTCCTGTGAAAGCAATGAAATTGCTTTGAAAAGCTATGAAAGGCCAACATATTTGCTCATCCTCATTGAGAACGGTCACAACGCACAATAAAGAAATGattgaggaggcatgtggacataacacataaTCTAAATTAAGGCATTTTAGGATACCAAAATCGAATTTatgcatgttaaaatatattttcccaacagcaaaattgtggctagtgaaattgccaagtggctagtaatgttggacaactactagccacagtggctggtgatcaaaaaggttaatgtcaagccctgggtTTAAAACCTCATGGGCTGTCATTGCATGGACAAAAATACTATTCCAAAAACAATGTTCTGTGCTCCAAAgcagtttggaacaacatgagagaGGAAGTCATCAATCCCGAAATATcttaaatttttttcttaatggagctaataatattgttaatattgttttttaaatattatttcagacaaacaaacaaacaaacaaacaaacaaaaaagacattctccaaaagaaaaaatattatgggaaatactgtgaaaatagcccctttcacacagtgataccagtaaatatccagaaaatttccagaacgaattcaaaaaagcgctgttcacaggCAAGGGCATTACGTAATTTTgctggaaaagaccattcacacatctattccaaaataccagtaaattctgacatcattagccagaaatgaataaatggctgcacttgtatttgtaaacatagaagtggTCAGgcttacacatttgactacattataaATTCTGTGAATGGattagtattgtgaacaacttcgatgaaaacatatggaacactttcgcatgtcgagatgtacaaaatgtgtgtgtgtgctggcgctcactgaAGCACTTTTTAACGTGCACACACGtcagcagagcttgaaggtaaacaaacagcgatAATTTTTTCCACAGAAGACATTAAGAAGTAACGTAGAAACATTatttgactaacatctagcagctaaaggtgtccgGAAAAATATGCAAagtcttttattttcataaacagcgcagATTTAAATgcatctgagtgttctgattggctggagtagtcATGTCAGCGAGTTCTAAATGTGAACATGCTTTTTCTTCTGTGTTCACActgcgcagcattccggcaaattaccggttaTGTAACAACTCTTACCTTACAATTTgtcagaacaaatttaccggtgcTTTCAAAAAggccctgttcacacatgatcccattccgggtaattttccggaaagatctgtatgtgtgaaaggggctaatgtcctTACTTCAGTAAATATTGTTAggaaaatacttgaaaaattatacaaatttcaCAGGAAAACAAATAATTTGCCTTCAATTGTATATGCTATTGATTAGAAACAAGAAGCTTCACCCCCAAATAACATCACAGCTTGTCACACTGCTCAAACAAACAGAGCAGCTTTAGAAAAGCCAGTGTTAGCACTCATTTGTAAGCATTTGTACtctaaaataaagtatttaacaTTGAGGAGAAAAATAAACACTTCACCATATAAATGGTTCACGTTAACGTTCAACTACACAGTGGCTGAATCCTCACCTTTTCATCAGGTCAAGATTATAAGTCAGAAGTGGATGATGTGAATAGATAGCATTATAtcaattttcttttttagaaTATCAAATAATTTGcactttcacacatacagtacagatgTAACACCACTTAGACAAGCATTAGACGctctattaaaaaatttaaataatgcatCCCATTTCGCACCCTGCTGGGAACCTGTGAATGACAAGAGTGCTTTATTGAAAAGTTAAGGTCGCATCCGCCTTTAGATTGCATGACAGCAATGACAACTGACTGTTTGCGCACTCCGGATAGGACGCCACATCTCTGAGGGCCAGATGACAATCGGATTGCATACAAAGAGATGGCTAGGCCAGGGTCACAGAGTCCCAGAGGAGAAGCGCTCCTCAAATGAGAGACTGCAACAAGCCACACAAGCCCAGTTTAAATACAGAGTCCCACATTTGCCATGTAGAAACATATAAGCTTTGTAAAAATGGAGAAGATGTTGGTCCAATGCAAACGGTAGAGTCCAGCAAGCTTGCAATCTTCCTCactataaatacatttcagtCAGATCCAAGAGGCCAACCTATCATTATTATGGATGGGCCGATCTGGAAAATGTGACGTCCAAAATGTGGCGTACGTGCAGGAGAAAGCCTAGAACTTCAGGAACCATGGCGAAATTTAGCGGATGCAACTTACCAGTCCAGCCAACGTTCGCTTTTGTTCATTATGGCCAAAGTACCAAACACTGGCTCATATAAAAAGACTAAAATAAAGAAAGTGACGAGCAGCATGACTAGAATCTCAGTTCTTGAGGTCATTTAAGATCATTCATCCAGTTGGTTTATGAGATGAACAGATGGACCTCAGGAGTAGGAATGCACAGGTCTTTACCAGAGCCCGTACTCGTACCGCATCTTGTGTTTATAGGTGTAATATGGGTGGGATGAGAGCCTTTGTAAATAAAGGCAGCTTGTTTACAAAAGGTATTGAATGAGCTGCAAAAACAGCATATAGACATTAGTCATTGACTAAAAAATATCTATTTCATTTATATAAACACATGAATAAATAGCCAACTCGCAACTCTCAGTTACCCAGTACCTCTGTTCAggggaaagaaataaaaaaaggaaaataataaaatggTGAAGAAATTATACATATTTCATGGTTGCCAGCACAGCTGGCACCTTTCATTTCAAGTTTGGACAGCCTGTAGGGTAACAGCATTCAGACAGAGCCACACTTCAGACAGTCTCTCTCTTGCTTTAAGAAATGTGGACCACTATCATGCAAGTTTCTGTCCTTCACAGAATCCCATCACAAACATTTGTACTTTCTGAAAGAAGACCAAAAACTCAACTTAATGCCTGATCAGAAATGTTACGGtgttaaaacaaacacacaaaacaggtGGTTTACAGTGTAACGGAAGTTGTATCGGCCAAACAACAGCTACAGTACtgctttttaaatcttttaatttaCACTCTCATTAAAAAGACTGGGGTCAGTAAGATCTTTAAGAAATGAACACCTTTAATCTAATAAAACTGATATAAGTGATAGTAAAGGCATTCATAATGTTAGAAGTGATTTCCATTGCATATAAATTGTGTTGTTCTGAGCTTTCAATTCATCATTAAATAATCCAGAAAAACGTGTAGCACAAATATTTGGCAGTTTtagaaaataattatatttagtgTCATAACATGTTTCTGGAGAACCAAATctgcatattataatgatttctgaagaattgtgtgacactgaagacttgaaTTATCACACAAGTTGCACTTCAAAATACAGAGATTAAAAGTTCTTTAAAATAGTAAGACTGCTGCACTACTGTATgcttgatcaaataaatgcaacttagtatatatatatatatatatatatatatatatgtatatatatatatatgtatgtgtatatatatatatatgtatgtatgtgtgtgtatatatatatatatgtgtgtttggggtcaattttttttcaattattctgttcctcaaggcagcatttataaaaatgtaaaaaatatttacaattttaattaaaataaaattaaatgctttttatattttaaataacggCTTTCATATTGTATGTACTTTCAAATTAAATTA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052677 True 5364 lncRNA 0.36 2 26411233 26416784

Neighbor

gene id symbol gene type direction distance location
XLOC_025382 NA coding upstream 49435 26355294 ~ 26361798 (+)
XLOC_025381 rps15a coding upstream 59577 26345732 ~ 26351656 (+)
XLOC_025380 si:ch211-156b7.4 coding upstream 67585 26342768 ~ 26343648 (+)
XLOC_025379 si:ch211-156b7.5 coding upstream 84470 26322596 ~ 26326763 (+)
XLOC_025378 rhot1a coding upstream 91475 26288981 ~ 26319758 (+)
XLOC_025384 NA coding downstream 219036 26635820 ~ 26636398 (+)
XLOC_025385 tmc5 coding downstream 317378 26734162 ~ 26751819 (+)
XLOC_025386 socs1a coding downstream 396274 26813058 ~ 26814953 (+)
XLOC_025387 dexi coding downstream 488240 26905024 ~ 26906351 (+)
XLOC_025388 emp2 coding downstream 610997 27027781 ~ 27056180 (+)
XLOC_025429 BX649540.1 misc downstream 3831955 30248739 ~ 30249036 (+)
XLOC_025374 FP016144.1 non-coding upstream 216774 26194344 ~ 26194459 (+)
XLOC_025371 NA non-coding upstream 330833 26076494 ~ 26080400 (+)
XLOC_025364 NA non-coding upstream 424289 25985339 ~ 25986944 (+)
XLOC_025360 FP101990.1 non-coding upstream 565905 25844151 ~ 25845328 (+)
XLOC_025390 NA non-coding downstream 877524 27294308 ~ 27343689 (+)
XLOC_025391 NA non-coding downstream 930055 27346839 ~ 27494805 (+)
XLOC_025392 BX000529.1 non-coding downstream 990312 27407096 ~ 27407211 (+)
XLOC_025393 NA non-coding downstream 1177589 27594373 ~ 27601473 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00018325 xylt1,LOC107567884,LOC107729195,LOC107690267,LOC107733871,LOC107590574,LOC107686990,LOC106588898 coding CM030135.1 CM030135.1 8290001 ~ 8315541 (+)
tiger barb (Puntius tetrazona) G21202 NA unknown NC_056701.1 CM032070.1 18991458 ~ 18993234 (+)