XLOC_025385 (tmc5)


Basic Information

Item Value
gene id XLOC_025385
gene name tmc5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 26734162 ~ 26751819 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050077
AACAGGACACAAAGATAAAATGAGATACAGCCCACTTGTACCTTGTATCCTACAATTAAACCACAACTTCCTTGTTCCTTCAGTCTAGTGAGCCCAGCAAACACCGCAGTCTGTTATTCCTGGAGCGCCTATGCacacaatgtaatgtttaaagtctatttatttattctctgcCAGGACAACTCTATGATCTGAAAAGCAGGATGAGGAGGATGAGTGTCTACCCACAACATGGCACAGCTCTGGAAAACCTGGGACTTACGGCACATGAAATCCAGCAGGAAGTTGAAAACAATACGTCTGAACTGGTATCAGATCTGTCAGACCTGTCAGCCGGAGCCAGATTTCAAGCGATACGGTCATTACCTATGTCATATAACGAGAGGAAAGCAATCAGGAACAGAGTGAACAACATCAAACTCTCGAAAACCATCCTCCCCACAGACTGTCGTCAACAGGTGTCTCTATCTTTCCGCAGGTTTCGTGCCAGCTTGACATCCGCCAGGCAGCGTTTGGTTGTATGGCAAGATACTCTGAAGGAGATCGGGGGCAGATTTGGCACTTCTGTCCTGTCCTACTTCTTGTTTCTCAAATGGCTGCTGAAGTTCAACGTCTTCTCCTTCGTCATCAACTTCTGCTTCATCACAATCCCACAAATTGTCCATGCGCCCAATATCAGCCATGTCACAGGCTTCAGAGGACTTGAGCTGCTCACTGGCGTGGGCTATTTCAACCAGACAGTCTTGTTCTATGGCGGTTATGACGGTGAAGTGATTGTATCCAAACCAGCCTACAACATGCAGCTGGCCTACTTTTTCACCATAGCTGCATACATGGTTCTGTGTGGGCTTTCTCTTATTTACAGCATGTCCAGATCCTTTCAGAAGAACTTTGTGCTAGAAACAGGCCCCGTTTCTGGAGGAGCCTGGCGTCTCCTGTGCAGCTGGGATTTCAGTGTCGTCAATGAAAAAGCCATACAGTACAACAAGAACAACCTCGGCATTCAGCTCAAGGAGTCCTTATCAGAAAGGCTACAGATGAAAAACAAAATCTCTTTGTCTGACAGAATAAAGCATCTGTCCCTTAACTTAGTAGCCTGGCTGCTCTGTTTATTACTTGCCTTAGGCTCCGGTGCAGGCATCTACTTTCTGGGTACGGAACAGTTGACCTTTAGTTTCAACCAAGATCCAAATGATTTAGTGTCTGAGGCGTCTACTCTGCTTCTGCCCGTGGTTGTGTCGCTTATCAACCTGATTGTGCCTCTCCTTTACTCCCTCATTGGCAAAATGGAGACTTACTCCAACCCACGGGCTAAGATCTACATCAGCATTGCAAGAAATATTATTCTGAAGATGTCCCTTCTTGGAATTCTTTGCTTTTACTGGCTCAATTTTGTTCCTGACAAAATCCCAtGTTGGGAGTCCTTTGTAGGACAGAGTGTATATCGACTTCTGATCATTGACTTCATATTCTGTCTGCTTGGCATTTTCTTTGGAGAATTCCTACGCAATGTAATCGGAACCATGTGCATCCAAAGTCTGGGCGTCCCAGAGTTTGACATTGCGAGGAATGTACTTGATCTGATCTATGCTCAGACTCTGGCTTGGATCGGAATTTACTTCTCCCCTTTACTTCCTGTAATGCAAGTCCTTAAACTGTTCATCATCTTTTACCTAAAAAAGCTCAGTCTCAGTATGAACTGTCAGCCTCCCAAACACACTGGCAGAGCTGCACAGATACAGACCGTCTTCATCGCTCTCCTCTTCTTCCCTTCATTCGTGGGAGCGCTGTCTATGGTGGCTTTCACCGTCTGGAGCCTGCAGCCCTCAGATCAGTGTGGGCCCTTTCAGGGTCTCAAAACCCCCTTCCACACCATTTTCAATTGGACTGATTCAATTCAGGGCCCTCCTGAAACCCACTGGGTCTGGTGGATATTTGAAAACGTCCTAAGAAGTGAACTCTTCTACTATCTGATTAGCCTCATCGTACTAGTTATCACTTTTTTTCTCTGGCAAATCACTCAGGGACGGAAACAGCTCATCAAGTCTCTGCGAGAGCAGATTGTAAATGGAGGAAAGGACAAAGCGTTTCTCTTGAACAAACTACAAAATATCCAAAGGCAGAGAAGAGAAATAGCATCTTACAGTCCTCAGCCTATCAGGCGCAGTATGCGGGGGAGTGTTCGGACAGTAGCTCAGGAGTTTGACCAGACGACATACTACAACCCGAACTGGATCAACACACTGCCCATGGATATGTGAAACCACAAATCGAACAATGCTGTATATATTGAATTGTAAATATTGCATTAACTATCATCTCTACTACATGGGAAAAGACGTTGTTCGGAAACATCAATAGTAATGATGCAGGAATGACTTTTTGTGCTCGTCCAATAGCCCTGCAAATTGAAATGTGGAAAAACAATAGACATTGTAGCCAAAAACTAAAAATCTAATCTCAAGACTTAATTTGtggacatttttttaattaaatagttcCCAAGTTTTAGTAATATTTCTCTCACTTTTTCAATTATGTCAATTAATAGACAGAATTAAGCTAAAATGAGCAATAacattctttttttcccctcatttcTTGTGCAGGGCTCCACAAATACTGTCAAATgaacatttgatttgtttttccaCCAATACACATCTATTCTGATGAGATATCTTTGTAAATACGAAAAAAACAAAttactattttcattt
>TCONS_00050078
ttttttcttttgggagTAATTTCTCAACCTAATTTAATATGTGATTATAAAGATTAATTCATTGCTACATTTTttcattaatcaaataaaaaaaaaaaatgacagctcAAGTTTTTTGACTGCTAAATAGCAGGTCAGTAAGCGATTTCATGCAATACATTAAGTAGAAATACATTGCATTCAGCCTGCGCTTATATTTCCCTACAGACCTTTAGTTTCAACCAAGATCCAAATGATTTAGTGTCTGAGGCGTCTACTCTGCTTCTGCCCGTGGTTGTGTCGCTTATCAACCTGATTGTGCCTCTCCTTTACTCCCTCATTGGCAAAATGGAGACTTACTCCAACCCACGGGCTAAGATCTACATCAGCATTGCAAGAAATATTATTCTGAAGATGTCCCTTCTTGGAATTCTTTGCTTTTACTGGCTCAATTTTGTTCCTGACAAAATCCCAtGTTGGGAGTCCTTTGTAGGACAGAGTGTATATCGACTTCTGATCATTGACTTCATATTCTGTCTGCTTGGCATTTTCTTTGGAGAATTCCTACGCAAGTAAGTCAAAAACTGGAACTCAAATACATCCTGACTATTGAACtagatttttgaaaaaaaaaaaaaaaaagtaataa

Function

symbol description
tmc5 Predicted to enable mechanosensitive ion channel activity. Acts upstream of or within cilium movement. Located in cytoplasm. Orthologous to human TMC5 (transmembrane channel like 5).

GO:

id name namespace
GO:0003341 cilium movement biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008381 mechanosensitive ion channel activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-120411-6 Predicted to enable mechanosensitive ion channel activity. Acts upstream of or within cilium movement. Located in cytoplasm. Orthologous to human TMC5 (transmembrane channel like 5).

Ensembl:

ensembl_id ENSDARG00000013252

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050077 False 2720 mRNA 0.43 18 26734162 26751819
TCONS_00050078 True 628 lncRNA 0.35 3 26742409 26743225

Neighbor

gene id symbol gene type direction distance location
XLOC_025384 NA coding upstream 97764 26635820 ~ 26636398 (+)
XLOC_025383 NA coding upstream 317378 26411233 ~ 26416784 (+)
XLOC_025382 NA coding upstream 372364 26355294 ~ 26361798 (+)
XLOC_025381 rps15a coding upstream 382506 26345732 ~ 26351656 (+)
XLOC_025380 si:ch211-156b7.4 coding upstream 390514 26342768 ~ 26343648 (+)
XLOC_025386 socs1a coding downstream 61239 26813058 ~ 26814953 (+)
XLOC_025387 dexi coding downstream 153205 26905024 ~ 26906351 (+)
XLOC_025388 emp2 coding downstream 275962 27027781 ~ 27056180 (+)
XLOC_025389 grin2aa coding downstream 319930 27071749 ~ 27277695 (+)
XLOC_025390 NA coding downstream 542489 27294308 ~ 27343689 (+)
XLOC_025429 BX649540.1 misc downstream 3496920 30248739 ~ 30249036 (+)
XLOC_025374 FP016144.1 non-coding upstream 539703 26194344 ~ 26194459 (+)
XLOC_025371 NA non-coding upstream 653762 26076494 ~ 26080400 (+)
XLOC_025391 NA non-coding downstream 595020 27346839 ~ 27494805 (+)
XLOC_025392 BX000529.1 non-coding downstream 655277 27407096 ~ 27407211 (+)
XLOC_025393 NA non-coding downstream 842554 27594373 ~ 27601473 (+)
XLOC_025402 NA non-coding downstream 1898128 28649947 ~ 28733765 (+)

Expression


Co-expression Network