G610512 (cish)


Basic Information

Item Value
gene id G610512
gene name cish
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 43486861 ~ 43488984 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU695056
ctggaacggaatgaaTGGAACGGTGTCAAACACTTCAAAtcacgtttgactccGTAGGCCTATAAAGCTTCTTGTGGCCATTGACCCACCAAAAGAGAACAGGACATTGAAGACAGAAGCAGTAGGACTCATGTTGAAGATTATTTTTTATAGAAAAAGGGATATGTACAGAGTCGGGGGGGTAAAAAAATGAccaaaataaaacattaaaatgcATCTCACTGGAAAACAATTCACTGCCACAGCAAGAGGGTGGGGAGCATATCCCTCATAGCACGGGGCCACGCTACAGTTCACACCACGTTTTGTTTTCCAGTGAATCTCATGCGGTGGGGTTCCCAGAACTCCACTTCCCCCTCTGAGAAATACAATAACGAGACACCATTTTCTGAAAGGTTCTTTCCCAGACATGGTCTCATGGCCAACCATGTGTCCGATGTGGCATTATTACTGACCAGTGCAGTGATGTGGTTTCCAGCTGCCAGGGACCAATTTCTGACAGCGCTCCTCGAGATTTAGTTGAACGGTTTTGTTTAATTTAGCTCTGCCCTCCACAGGGGTGCAGATCACAGGACCCTCATACCTGGAAGGGGTAGTCCTGCAGGAAGCGCACCAGTGGGCGTGGCAGAGGCAGTTGGTCAGGACAGTCTGTGCTGCAGTTGATGGTGAGGCGTGCAAGGTGCTGTAGGGAGGGGAAGGCCTGGGGCTTGTGCAGGGCCCGCTTGAGCTTCAGCAGTACTGTGCTCTCCTGAACTGTCCTCTGGGCAGGCTTGCCACCATGAGTTTCCTCCACCTTCCCCTGCTGCACCTTCCTCCCTGGTCCCACATAGTACTGCACCATGCTCGGCACATCAGGGAAGGACAGAAGGCTGGGTCGGGCTGGCGAGCTGGAGTCTAGCAGAAACCGGGCTCCACTGTACTGGATGCGTATACTGGTGGGACCACGGGCAGTCCTAACAGACAGGGTCAGCATGTACAGGGGATGGCTGCTGTCTCTAATCAGAAAGGCCCCTTCTGACGCTGCCTGCAGAGCTTCATGGGCCTGACCTGCTGTGATGGCTCCCCAGTACCAGCCTGCAGAGTTGGGTCAAAGGTATCAAGGTAGAATGTGTTGTTGGTGATGGTGCGCAGGTCTTTAGTGGGGTCCCACTGCGGAGAGGTGCTGTGAATGCAGTGAGGGGAGGAGATGCTCCCTGTCCGCATTCCTAGGTGGCCCTCTGTGGGTGTACCAGACAGCAGTGGTCTAGGGCTGTAAACAAGATACCACAATAATAAGCACGGGACTAGTGTAGGAAACAGTAGGGGGGACACCGGTATATCTAACACGTTTAACCTTCCATTACATTTCCCACTACCCTGTTATAGGGTAacacttgttgtttgtttttGCATCGCTTTTGCACACACAAAGCTCATCATTTGGGAGGGGTGTCTTTGGAAAACCTCAAATCTCTACATTAAATCTCGGAcagctgcctgcctccctcccttgaACATTGGCCAGACAAAGAGCCCACACATCAAGCGGTCACAGACTGTGAGTGTGAATTGATCGAGATGCTCCGTAACAGGTGTTAGGACTGTTCAAATTGGTCGTGTTACAATATGAATCCCCACATGTACATTTTCAAGCCTACGTAAAACAACTTCAAATGAGAATACCACCAAATAGCCTTGTACACGTTCTATATGGGGCGCTCTTGAAATGTGGTGGCATTTGCGTCCCTTTGCAACcgtaatatataatatatgccatttagcagacgctttaatCCAAAGCGATTTACAGTTGTGTGCAttcattttacatatgggtggcacagggaatcaaacccacaagccTGGCCTTGCCCa

Function

symbol description
cish Predicted to enable 1-phosphatidylinositol-3-kinase regulator activity. Acts upstream of or within negative regulation of erythrocyte differentiation; negative regulation of lymphocyte differentiation; and negative regulation of receptor signaling pathway via JAK-STAT. Predicted to be part of phosphatidylinositol 3-kinase complex. Is expressed in blastomere; pronephric duct; thymus; and ventral wall of dorsal aorta. Human ortholog(s) of this gene implicated in malaria and tuberculosis. Orthologous to human CISH (cytokine inducible SH2 containing protein).

NR:

description
cytokine-inducible SH2-containing protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU695056 True 1854 lncRNA 0.50 3 43486861 43488984

Neighbor

gene id symbol gene type direction distance location
LOC110527808 ab14b coding upstream 451650 43027924 ~ 43035211 (+)
LOC110527804 cssa22h3orf18 coding upstream 495497 42985660 ~ 42991364 (+)
rbp7b LOC106582767 coding upstream 551613 42932983 ~ 42935248 (+)
LOC110527799 LOC106582765 coding upstream 556227 42923547 ~ 42930634 (+)
LOC110527794 LOC106582762 coding upstream 603181 42854920 ~ 42883680 (+)
LOC110527818 NA coding downstream 35703 43524687 ~ 43526668 (+)
LOC110528952 NA coding downstream 37947 43526931 ~ 43529047 (+)
mon1bb LOC106582805 coding downstream 48013 43536997 ~ 43545817 (+)
si:dkey-183j2.10 LOC106582807 coding downstream 78676 43567660 ~ 43582311 (+)
ppcs ppcs coding downstream 475493 43964477 ~ 43966869 (+)
G610477 NA non-coding upstream 31258 43455337 ~ 43455603 (+)
G610476 NA non-coding upstream 31870 43454628 ~ 43454991 (+)
G610475 NA non-coding upstream 32916 43453655 ~ 43453945 (+)
G610474 NA non-coding upstream 33387 43453170 ~ 43453474 (+)
G610473 NA non-coding upstream 33775 43452726 ~ 43453086 (+)
G610517 LOC106582800 non-coding downstream 6028 43495012 ~ 43497725 (+)
G610528 LOC106582801 non-coding downstream 24781 43513765 ~ 43514743 (+)
G610545 NA non-coding downstream 63346 43552330 ~ 43560669 (+)
G610564 LOC106582806 non-coding downstream 96264 43585248 ~ 43586231 (+)
G610627 NA non-coding downstream 134612 43623596 ~ 43673775 (+)
G610436 NA other upstream 76055 43410391 ~ 43410806 (+)
G609436 NA other upstream 665616 42820956 ~ 42821245 (+)
G608390 LOC106582745 other upstream 1656053 41827211 ~ 41830808 (+)
G607904 NA other upstream 2023692 41462824 ~ 41463169 (+)
G606977 NA other upstream 2852422 40634181 ~ 40634439 (+)
G610563 LOC106582806 other downstream 95036 43584020 ~ 43584896 (+)
G610622 NA other downstream 340020 43829004 ~ 43831880 (+)
si:dkey-264d12.5 LOC106582817 other downstream 513640 44002556 ~ 44035143 (+)
G613664 NA other downstream 2789750 46278734 ~ 46279333 (+)
LOC110528958 NA other downstream 3143138 46629591 ~ 46638492 (+)

Expression


Co-expression Network