G610958


Basic Information

Item Value
gene id G610958
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 44185475 ~ 44186204 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU695587
ggtgaaggccccagtgcagcagcaacagcacatgatggagacgatgatgaggaggagaccatctctctggattccagaaggcatgaggacccagatgctatacagtgggaaaaccagcctggcaacatagtgcgtattaataaaaggacaccacatcctgccaaattccagctgcgctaattgtattgtgttcacagagctcacaagctatcagaaagttgtatggcaaccacctccggtgccaaatagaactggcagacatagacattcagtacaagaagaaaaagatggaaaatcttgcactggagttcgaaataaaaaaagaggacaattaggaaactggaccttgaaataaaaaaacttgagagggaggtgagatatgccttcaatgtacactgtatgctaac
>TU695586
ggtgaggagtcctcatcaaaatcaaaaaatctaatttcttttacaggacccagatgctatacagtgggaaaaccagcctggcaacatagtgcgtattaataaaaggacaccacatcctgccaaattccagctgcgctaattgtattgtgttcacagagctcacaagctatcagaaagttgtatggcaaccacctccggtgccaaatagaactggcagacatagacattcagtacaagaagaaaaagatggaaaatcttgcactggagttcgaaataaaaaaagaggacaattaggaaactggaccttgaaataaaaaaacttgagagggagctccaagaagatgacacagctcaaaataaaaattaggtatattctcgtaaagtcaagtgagccatgacatatgagctcttattgtgagcacacaggacg
>TU695588
ggtgaggagtcctcatcaaaatcaaaaaatctaatttcttttacaggacccagatgctatacagtgggaaaaccagcctggcaacatagtgcgtattaataaaaggacaccacatcctgccaaattccagctgcgctaattgtattgtgttcacagagctcacaagctatcagaaagttgtatggcaaccacctccggtgccaaatagaactggcagacatagacattcagtacaagaagaaaaagatggaaaatcttgcactggagttcgaaataaaaaaagaggacaattaggaaactggaccttgaaataaaaaaacttgagagggagctccaagaagatgacacagctcaaaataaaaattagcaatcagtacaaccacgtcatcgttataaggcatcgccctcttttgcccacccccccc

Function

NR:

description
PREDICTED: uncharacterized protein LOC109103425

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU695587 False 407 lncRNA 0.44 2 44185475 44185968
TU695586 False 430 lncRNA 0.40 2 44185603 44186111
TU695588 True 425 lncRNA 0.42 3 44185603 44186204

Neighbor

gene id symbol gene type direction distance location
LOC110527839 NA coding upstream 7410 44164248 ~ 44178065 (+)
LOC110527834 LOC106582821 coding upstream 92940 44085865 ~ 44092535 (+)
si:dkey-264d12.5 LOC106582817 coding upstream 150332 44002556 ~ 44035143 (+)
ppcs ppcs coding upstream 218606 43964477 ~ 43966869 (+)
si:dkey-183j2.10 LOC106582807 coding upstream 603164 43567660 ~ 43582311 (+)
mmel1 LOC106582826 coding downstream 29330 44215534 ~ 44261277 (+)
slc45a1 LOC106582828 coding downstream 90716 44276920 ~ 44290303 (+)
LOC110527111 LOC106582832 coding downstream 135435 44321639 ~ 44449234 (+)
LOC110527112 NA coding downstream 264382 44450586 ~ 44464197 (+)
LOC110527847 LOC106582833 coding downstream 281390 44467594 ~ 44524862 (+)
G610955 miip non-coding upstream 2270 44181461 ~ 44183205 (+)
G610893 NA non-coding upstream 83000 44098211 ~ 44102475 (+)
G610902 LOC106582819 non-coding upstream 105355 44079328 ~ 44080120 (+)
G610889 NA non-coding upstream 113602 44069642 ~ 44071873 (+)
G610963 NA non-coding downstream 12315 44198519 ~ 44198790 (+)
G610967 NA non-coding downstream 15330 44201534 ~ 44201792 (+)
G610971 NA non-coding downstream 20108 44206312 ~ 44206516 (+)
G610972 NA non-coding downstream 24022 44210226 ~ 44210436 (+)
G610979 NA non-coding downstream 35013 44221217 ~ 44221632 (+)
G610622 NA other upstream 353595 43829004 ~ 43831880 (+)
G610563 LOC106582806 other upstream 600579 43584020 ~ 43584896 (+)
G610436 NA other upstream 774669 43410391 ~ 43410806 (+)
G609436 NA other upstream 1364230 42820956 ~ 42821245 (+)
G613664 NA other downstream 2092530 46278734 ~ 46279333 (+)
LOC110528958 NA other downstream 2445918 46629591 ~ 46638492 (+)
G615624 NA other downstream 3653184 47839388 ~ 47839722 (+)
G617133 NA other downstream 4640623 48826827 ~ 48827227 (+)
tafa4b LOC106583040 other downstream 5386116 49571790 ~ 49620194 (+)

Expression


Co-expression Network