G611470


Basic Information

Item Value
gene id G611470
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 44188845 ~ 44191529 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU696170
GCTATCTCCTGCTGGGActatgttgttctgtgtgtttactgCTTATCAAACATAATTTCAAATAAGGAATATAAGAGATGTCAGCCAGTAGAGTCCCACTATGACGCCTACAGCTCCGCAGCAGGGGAGCACACCGAGGATTTCAGATCAGAGGAAATTTTAAAAAGTGTGGTAAAGCCATGGTTCGCATCTGGTAAAGAAGGACCCACAGTATTTTTAAACCGTGTAAAACTATGATGAGATCAATACATTCAGTGACTCCAGGTGGGATTTGAATGTAGCTGTAACATGGTTGGAGCACTTAGCTCAGCCTCAGCATGAACACAGTGTCCTGTTTTTTTGTTGCCAGAACACTTCTTGTGAAATATATTTCCCTTTGTTATTGACTTTTACAGTTCCTTCATATCTGAAAGAGTCATTTAAAGTCACATATTGCCCCCTACAGGGTATGAAATGGATAACATTCCAGATGTAAAAATGATATTCTTTGTTTCACCTTTTACTCTTTTAGTTCACCAAAAAAGCTCCCAGAGCTCTGGTCTCATTGAGTATTGACTGAATTGCTTTACATGTATCCTATGATTACCACTGTCAAATGAACCAGGGCTTTTACAGTAATGAAGGTTGCCATTTATTCTAAATTCTAAGAATGATATGTTTGTAAATCTTGTGTAATTccctattttgttgttgttgttgttgttgtgatgtcCGTGACCAGTGGTTAATGGACGATGAGGCGTTCCGGGCAACAAGCAGTAATTGCCTGGAGCACAACAGTGATTACAGGGACACATTGGAGTATATGACTTCATAACTGGCACCATTTAATGATTATGTGGTGCAACTCACAGTACTGTGGTCAGCTAATCACACTAGACTGGCTGGTACACATCTCAATGCAAACGAGCCGTGACTGGAAAACAGAGTAGCAGCTCGCCCACACAGCTCAGCACCATTCAAAACGAGAGCATTCATATCATTATGACTGTGATCCTCTGCCACCGGCAGTGCCATGATTAGTGTCACCACGGATGGACAGGTTTAATTGAAGATAAACTAATCTCCTCCTGTCAGTAAGCAGTGGATGAATACTCACAAATTTCTCAGCTTTTACAAGCACAGATTGTCCTTTTAGGATGGCACAATGAAAAACATTACAATGACATTGTCTAAAGTTTTCAGAAACTATGAATGAAAATGTTAATTATATTAAACAGTCATTGTACATTTAAGTGATACtaccctcgaagccggtgtttggaggatatattggcattgGTGTTGTtaggcaggttttttttttttttacctcttttgtatctcttgcttgctagctagccaactacggctaacttgcGCTCACGTCAAACAATGCATCcagaaaaataacagtagctgcatttgttgaagctgttttctattgacatttatttggacgcatccataacaatgagatAATGAGACGCTattttgcctggcatagaaaatatgttgttcagaggagctatcCAACgccacagctaacacaatcacttcaaactgaataTGAAAATACTGCAAACTAGCAGCACTTCGTTTCGTTTCACCTTTTTcaatttgtatatatccataaaaatgatgccagctgattcatgatttcgactggctgagaaacgctgcgtCTCGTCCCGACTCCTGACAAGTTCATTACTATGGTACAgcaggagatcgaatttgaatattgaaacaatgttgcaaatgtcggagaaaCAGACAGCAACGTTTacacaaatctccgctgttgaaactaaatgttagtctaaaagaaatgtgagatagagaggaagatCACATTTATATATTGTCTGGCtaggctgatgagacagtggaccAAGCAGGCAGATGGAACATAGTAAATATGCagtttaacgtcatagatttaccCGGTGGTAATTTGTGGCATAGACACCTGCTGGAATACCGTTTTTAACcgatcagcattcaggattagacccactgATTGTATATAACATGTTACAGACAATCTGTAGGGGGATAATATAATTGACTGGGGCATCATGTGTTATGTCACTCCTTGTCATTTTAATTACATATGGAATCCTAACTTCCTGACAGATCACATAGGTTTAAAAAACTAAATGTGTATTATATTATTTGATTACATTCTCAGACCTAATGCTGCGTTAATTTTCAAGTGGGGAGGTGGTAATTACCAGTGAAGTGAAGTCGTAAATCCCAATTGGATGCATTCGTGTGTTTGAACTCACCGAGAAACGCAGATTGGCTAATGGTCAACACACTGCATCAACCATAAACTAAGTAACTATTACAGCGATCACGCTTGTAAACAAATTATAGCGTTCAAAAACCATATTAATAGATAGCTTTAtataaaatgttttgttgttgcatgaCTGTCGAAAAGGCTGTTATAGAGGTAATTTCCTTAGTAGGTGATGTCAGAGACTACTAGCATGTTGGAAAAATCGGAGCTCAGGGATGATATACGagttcaattaaattcaattgactttatt

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU696170 True 2540 lncRNA 0.39 2 44188845 44191529

Neighbor

gene id symbol gene type direction distance location
LOC110527840 miip coding downstream 4641 44136185 ~ 44184204 (-)
si:dkeyp-61b2.1 LOC106582824 coding downstream 12754 44163371 ~ 44176091 (-)
tnfrsf1b LOC106582823 coding downstream 24412 44157058 ~ 44164433 (-)
LOC110527835 LOC106582822 coding downstream 42878 44103834 ~ 44145967 (-)
znf362a LOC106582819 coding downstream 105048 44071609 ~ 44083797 (-)
prxl2b fam213b coding upstream 70099 44261628 ~ 44269305 (-)
si:ch211-222l21.1 NA coding upstream 99734 44291263 ~ 44294096 (-)
LOC110527846 LOC106582831 coding upstream 123974 44315503 ~ 44320470 (-)
ghrh LOC106582839 coding upstream 394781 44586310 ~ 44590398 (-)
lbp/bpi-1 lbp/bpi-1 coding upstream 404230 44595759 ~ 44602923 (-)
G611423 NA non-coding downstream 154001 44034496 ~ 44034844 (-)
G611275 NA non-coding downstream 420254 43768358 ~ 43768591 (-)
G611215 NA non-coding downstream 519924 43668413 ~ 43668921 (-)
G611214 NA non-coding downstream 521187 43666707 ~ 43667658 (-)
G611486 NA non-coding upstream 9019 44200548 ~ 44200845 (-)
G611489 NA non-coding upstream 13932 44205461 ~ 44205666 (-)
G611499 NA non-coding upstream 31922 44223451 ~ 44223726 (-)
G611502 NA non-coding upstream 35916 44227445 ~ 44227686 (-)
G611508 NA non-coding upstream 43688 44235217 ~ 44235521 (-)
G610570 LOC106582807 other downstream 608881 43579093 ~ 43579964 (-)
LOC110527816 LOC106582802 other downstream 651880 43526691 ~ 43537037 (-)
LOC110527812 LOC106582796 other downstream 749932 43435578 ~ 43439076 (-)
G610183 NA other downstream 1021525 43127811 ~ 43167320 (-)
G611674 NA other upstream 293326 44484855 ~ 44485752 (-)
G613411 LOC106582852 other upstream 1683436 45874965 ~ 45875700 (-)
LOC110527888 LOC106582868 other upstream 3076794 47260325 ~ 47284791 (-)
G616880 NA other upstream 4295518 48487047 ~ 48529168 (-)
G617624 LOC106582928 other upstream 4992895 49184424 ~ 49186096 (-)

Expression


Co-expression Network