XLOC_025388 (emp2)


Basic Information

Item Value
gene id XLOC_025388
gene name emp2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 27027781 ~ 27056180 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050082
ATTTCACTACTACTACGTTTACCCTGCAGTCACGCTCACGCTTGCATCACTTTGTCTCCACGTCTGGCTGCCCCCTTTGCAAACTATAAAATATTTGACACTTCAGGCTTCTCCACAGCGaTCCTTCTGCTTTTGACTTTCTGTTCCACCATCAACCATGTTGGTTATTTTGGCCTTCATCATCCTCTTCCATATCACCTCAGCAATACTACTCTTCATAGCAACCATCAATAATGCATGGAGGATTAAAGGCGACTTCTCTATGGATCTCTGGTATAACTGCAACACCACAGCCTGCTATGATATTCCCAAAAGTGCAACTTATGACGCAGCATATCTTCAGGCAGTGCAGGCCACCATGATACTGGCCACCATCTTGTGCTGTGTGGgattctttgttttcattcttcagCTCTTCCGTCTAAAGCAGGGAGAGAGATTCGTCTTCACGGCCATAATTCAGCTTCTGTCTGCTTTCTGTGTGATGACCGGTGCTTCTATCTACACAGCAGAGGGCTTAACCTTCAATGGCCAGGAGTTTAAGAATGCAGAGTATGGCTACTCCTTCGTTGTGGCCTGGGTCGCGTTCCCAATGACGCTGCTGAGTGGCCTGATGTATCTAGTGCTGAGAAAACGCAAATAAAAGTGCAACATACCACCTCACCATCTGCAGCCTTAGCCAAGACACTCGAATTCtaataaaacttgtttttaaaagtaGATAAAAACAGAAAATTCACCACCGGTCTGAAGTCTGGgatcagttttttgttttttttgtttacatttttcaaagaATTTTGCTCACcatgactgcatttatttgatcaaaaatacagtaaaactgtaTAAATAgatgttaaatattaattctattttaaatgAGAGTTTTGTTAGTGAAagtagtttaaaatgtaaattatttccaTGATGAAAAGtggaattttcagcatcattacttcagtTTTTAGTAATCCTTATAttatgattcattcattgattttcttgttggcttagtccttttattaatctggggtcgccacagcagaatgaactgccaacttatccagcatatatttttaagcagcggatgcccttccagctgcaacccatcactgggaaattatAATATGATTAtcaagaaaattattattattattattatttttattattattatcagaattGAAGTGCCTTATCTTTTTGTAGAAACTGTAGCAGTCAGCACTATACATTCAGTTCCATTCATAAGTACAGTtactaatgtatttaattttactcTAAGGACCCATTCAGTTTTACAACAGTGAAataaatttataatgtttataaaataaataaaactaatttgtgAACGAATCCTGTAAGGCAGCAATATGTTTCACAGTGCAggattaaattacactttaactACCACatgctattattatattatttttttacatatcttactgtattatttattaaatgaatgcagccttgatgagcagaAGATACttcttttaattacattaaaaacaaaagtcttttgactggtagtgtacttGCCAAAGTAAGTCAACTTGTAATATTACTCACTGCATACTGGAAACATAATTAGATTTTGTTAAGAGTGTCACATTTTTTAGAATCTTGTGATTTAGAGAGGAATAGAATAAGACAGGAGAGGCAGATATAATAGGACATATTTATAAAATGGAACCACTATGGGCTTGACGTGAATGGTGTGAAGTTGGCAGTTTGTATTAAATAACATGTTATTGTGATATTTCCGGGTCATTGTGTGTGGCTGGGAAGAAGTCATTAAAACCAACAAAATATGAAATATCGTGCTGCCAGTTTGCAGAGCACTATATCATACTTGAAGCTGAACAAATTGTCGATAGTAGTGGCACGATGTGTTCTCGtgtatagtttttgtttttatgtaaaatagTCTTTTAGTGTTGACTAATTAATTATAttgcatgtttttatttgtttgcagcATTTAATATGAAATCATTATTAACATAAGTACAGATCTGTAGGTTTTTTTTAGgcgttgtgtttgattagggcacTTGGGATTTCTGTCATATTCATGCAAATAATAACCGTAGGATGAAGGTGTTGGTGAAGCACACCAGTGGTTTCAGTTTTCTTGTCTGAAAGGACCAGATCACCCAGAAATTAAATTTACCTCACGAtatattctccctcatgtggtttcaaacctgtatgagtttcttttttctgttgaacaaaaaaaaaaaaaagatactttgaaaaatggtGTACCATTgattccatagtaggaaataaaTTACCATGGAAGCCTATGGGTACCACCAACCAGCATTCTTTAGAAGAACTTAATCTGTGTTCAATAGAAACTCAAATAAGTAAcaggagaataaatgatgacagatatttGATTTTTGGGCGAACTAACCCTTTTATATTTTCGTCCTCAAATCTGCTATGGAATTAAAAGCAACTAGCTAAAATCATTTAGGCGAAAGTGAAGTTAAGCTGTATTTATTAAGACTAACTGCATTGTTGctgttaatattgttttttgtaATGAAGTATTATATCAACAGGCCTGAACATGGTTGTTTAATGCTCACTTTTCTGAaggtttaattcattttaaagaagGCTTTTGTAATCGGAAATGAAACCACAATGGcagctttgtttttaaatgtctgctGACTTGTTCAGGTCTGCTCTGTTTCTGGAGACTGATCCCATTAAGGGCTcaatattgttcttttttaaatcaaataaatgtattttacattaaaacaaa
>TCONS_00050083
GTTGTCTTTGTCTTTATCAGCATATCTTCAGGCAGTGCAGGCCACCATGATACTGGCCACCATCTTGTGCTGTGTGGgattctttgttttcattcttcagCTCTTCCGTCTAAAGCAGGGAGAGAGATTCGTCTTCACGGCCATAATTCAGCTTCTGTCTGCTTTCTGTGTGATGACCGGTGCTTCTATCTACACAGCAGAGGGCTTAACCTTCAATGGCCAGGAGTTTAAGAATGCAGAGTATGGCTACTCCTTCGTTGTGGCCTGGGTCGCGTTCCCAATGACGCTGCTGAGTGGCCTGATGTATCTAGTGCTGAGAAAACGCAAATAAAAGTGCAACATACCACCTCACCATCTGCAGCCTTAGCCAAGACACTCGAATTCtaataaaacttgtttttaaaagtaGATAAAAACAGAAAATTCACCACCGGTCTGAAGTCTGGgatcagttttttgttttttttgtttacatttttcaaagaATTTTGCTCACcatgactgcatttatttgatcaaaaatacagtaaaactgtaTAAATAgatgttaaatattaattctattttaaatgAGAGTTTTGTTAGTGAAagtagtttaaaatgtaaattatttccaTGATGAAAAGtggaattttcagcatcattacttcagtT

Function

symbol description
emp2 Involved in regulation of glomerular filtration. Predicted to be located in cytoplasm and nucleus. Predicted to be active in plasma membrane. Is expressed in blood vessel; orbit; pectoral fin; pharyngeal arch; and pronephros. Human ortholog(s) of this gene implicated in nephrotic syndrome type 10. Orthologous to human EMP2 (epithelial membrane protein 2).

GO:

id name namespace
GO:0003093 regulation of glomerular filtration biological_process
GO:0008284 positive regulation of cell population proliferation biological_process
GO:0045121 membrane raft cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005634 nucleus cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016324 apical plasma membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040822-24 Involved in regulation of glomerular filtration. Predicted to be located in cytoplasm and nucleus. Predicted to be active in plasma membrane. Is expressed in blood vessel; orbit; pectoral fin; pharyngeal arch; and pronephros. Human ortholog(s) of this gene implicated in nephrotic syndrome type 10. Orthologous to human EMP2 (epithelial membrane protein 2).

Ensembl:

ensembl_id ENSDARG00000044588

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050082 False 2797 mRNA 0.35 5 27027781 27056180
TCONS_00050083 True 654 lncRNA 0.39 2 27052190 27054349

Neighbor

gene id symbol gene type direction distance location
XLOC_025387 dexi coding upstream 121430 26905024 ~ 26906351 (+)
XLOC_025386 socs1a coding upstream 212828 26813058 ~ 26814953 (+)
XLOC_025385 tmc5 coding upstream 275962 26734162 ~ 26751819 (+)
XLOC_025384 NA coding upstream 391383 26635820 ~ 26636398 (+)
XLOC_025383 NA coding upstream 610997 26411233 ~ 26416784 (+)
XLOC_025389 grin2aa coding downstream 15569 27071749 ~ 27277695 (+)
XLOC_025390 NA coding downstream 238128 27294308 ~ 27343689 (+)
XLOC_025391 NA coding downstream 290659 27346839 ~ 27494805 (+)
XLOC_025392 BX000529.1 coding downstream 350916 27407096 ~ 27407211 (+)
XLOC_025393 NA coding downstream 538193 27594373 ~ 27601473 (+)
XLOC_025429 BX649540.1 misc downstream 3192559 30248739 ~ 30249036 (+)
XLOC_025382 NA non-coding upstream 665983 26355294 ~ 26361798 (+)
XLOC_025374 FP016144.1 non-coding upstream 833322 26194344 ~ 26194459 (+)
XLOC_025371 NA non-coding upstream 947381 26076494 ~ 26080400 (+)
XLOC_025402 NA non-coding downstream 1593767 28649947 ~ 28733765 (+)

Expression


Co-expression Network