Fish Transcriptome and Expression Database

Home /
Search /
- Gene
- RNA
- Bioproject
Expression /
Analysis /
- Coding ability prediction
- Expression count
- Visual Omics
Tools /
- Neighbor
- BLAST
Statistics /
Download /
Help

model fish

XLOC_025391

Basic Information

Item	Value
gene id	XLOC_025391
gene name	NA
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007114.7
NCBI id	CM002887.2
chromosome length	62628489
location	27346839 ~ 27494805 (+)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052343
GTACTTTAGAATATAGTTTTCAAATGACTGACCTCGCCATTCACAGGATCAACCTTAAATTGAAAGTTGGAGTCGGCTATTCGTTTGGTTGACAATCAAGGGATTTCTATTGTTTTCCAAGAAAGTCGATCATCAAAGcttacaaaagatgggactcgaacccggtcgtcatcCTCGTTGTGGTCCTcacaactcctctctgtg

Function

GO: NA

KEGG:

id	description
ko03230	Viral genome structure
ko05164	Influenza A
ko03200	Viral proteins

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00052343	True	204	lncRNA	0.42	2	27346839	27494805

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_025390	NA	coding	upstream	3150	27294308 ~ 27343689 (+)
XLOC_025389	grin2aa	coding	upstream	69144	27071749 ~ 27277695 (+)
XLOC_025388	emp2	coding	upstream	290659	27027781 ~ 27056180 (+)
XLOC_025387	dexi	coding	upstream	440488	26905024 ~ 26906351 (+)
XLOC_025386	socs1a	coding	upstream	531886	26813058 ~ 26814953 (+)
XLOC_025393	NA	coding	downstream	99568	27594373 ~ 27601473 (+)
XLOC_025394	usp7	coding	downstream	111700	27606505 ~ 27663447 (+)
XLOC_025395	clcn7	coding	downstream	170059	27664864 ~ 27709312 (+)
XLOC_025396	arhgdig	coding	downstream	218805	27713610 ~ 27769232 (+)
XLOC_025397	eci1	coding	downstream	275305	27770110 ~ 27777671 (+)
XLOC_025429	BX649540.1	misc	downstream	2753934	30248739 ~ 30249036 (+)
XLOC_025384	NA	non-coding	upstream	710441	26635820 ~ 26636398 (+)
XLOC_025383	NA	non-coding	upstream	930055	26411233 ~ 26416784 (+)
XLOC_025382	NA	non-coding	upstream	985041	26355294 ~ 26361798 (+)
XLOC_025374	FP016144.1	non-coding	upstream	1152380	26194344 ~ 26194459 (+)
XLOC_025402	NA	non-coding	downstream	1155142	28649947 ~ 28733765 (+)
XLOC_025403	NA	non-coding	downstream	1270888	28765693 ~ 28783757 (+)
XLOC_025406	NA	non-coding	downstream	1404324	28899129 ~ 28926075 (+)
XLOC_025410	BX005369.1	non-coding	downstream	1672215	29167020 ~ 29167147 (+)

Expression

Co-expression Network